Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 206 a.a., sugar ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score = 64.7 bits (156), Expect = 1e-15
 Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 26  YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDG 85
           YR+G GD + + V+  PE+S    V  +G    P    I   GKT +EV   I    L  
Sbjct: 42  YRIGPGDNLNVIVWRNPEVSLVVPVRPDGKFSTPLANDIEASGKTPKEVGAEIAKA-LSA 100

Query: 86  YLINPNVSVSILEYRPFF-----VNGQVMKPGSYPYHPGLTVNKAITIAGGFTE-----R 135
           Y+ +P V+V +  +   +     V GQ  KP + PY   +++   +   GG TE     R
Sbjct: 101 YITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQALPYRKEMSLLDVVIAVGGTTEFAAGNR 160

Query: 136 ASKTNLF------ISSSDDPEAKPTKATLLSKLQPGDILTVAESFF 175
           AS   L       I+   D   K    +    ++PGDIL + ES F
Sbjct: 161 ASVIRLVDGKQTKIAVRLDDLMKDGDISANLAMRPGDILVIPESIF 206