Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., capsular polysaccharide transport protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 44.7 bits (104), Expect = 1e-09
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 9   LLCLLVWPSLAVANDDFYRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKG 68
           L+ +L+  S+    D  Y +  GD I + V+ E ELS +  V  +G I  P +G +   G
Sbjct: 10  LVMVLMGASVGYCFD--YIINHGDGISVNVWGEKELSVKVTVRPDGRITLPGIGDMDAAG 67

Query: 69  KTLEEVKTTIHDGLLDGYLINP--NVSVSILEYRPFFVNGQVMKPGSYPYHPGLTVNKAI 126
           +T E+++  I     +  + NP   VSV + +     V+G  +KPG  P     T+ + +
Sbjct: 68  QTAEQLQAKITTRYAE-LVRNPVVTVSVDMSQNNSVIVHGPGVKPGMVPMAGRTTLLQLL 126

Query: 127 T 127
           T
Sbjct: 127 T 127



 Score = 31.6 bits (70), Expect = 1e-05
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 66  LKGKTLEEVKTTIHDGLLDGY---LINPNVSVSILE--YRPF------FVNGQVMKPGSY 114
           L G TL    T +  G  D Y    I  +V +   +  + PF      +V G V +P + 
Sbjct: 137 LDGATLTREGTVLRTGFRDLYERGAIADDVELKPGDRVFIPFRAKWSVYVVGAVNEPMTL 196

Query: 115 PYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKATLLSKLQPGDI 167
            YH G+T+ +A+  A GFT  A +    +    D   +         +  GD+
Sbjct: 197 TYHEGMTLMEALLAAKGFTRFADRNKTEVVRERDGRQEVVVVRAGDLIDKGDL 249