Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., capsular polysaccharide transport protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 43.9 bits (102), Expect = 5e-09
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 19  AVANDDFYRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTI 78
           A  + D   +  GD++ ++++ +        V++ G++D   +G + + G    ++   I
Sbjct: 62  AARSGDTREIVAGDRLVLRLWGDRSFDGVLTVNEAGDVDITDVGPVPVAGLAQAQLADAI 121

Query: 79  HDGLLDGYLINPNVSVSILEYRPF--FVNGQVMKPGSYPYHPGLTVNKAITIAGGFTER 135
              L    + N  + V++L+ RP   FV G V++PG Y   PG  V   +  AGG   R
Sbjct: 122 KSKLSATGVENVQMYVTLLDSRPLSVFVTGFVLRPGRYTGGPGDMVLAYLDKAGGIDPR 180



 Score = 24.3 bits (51), Expect = 0.004
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKATLLSKLQ 163
           V G+V+ P +  +     +   I  AGG++ RA  +++ I   +    +    T    + 
Sbjct: 443 VTGEVVMPQAIVWAGDKRLKDYIRGAGGYSNRADTSSVLIVRPNGEVFRTGDTT----IA 498

Query: 164 PGDILTVAESF 174
           PGD L V   F
Sbjct: 499 PGDHLMVLPRF 509