Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., polysaccharide secretin protein hfsD from Caulobacter crescentus NA1000

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 5/144 (3%)

Query: 26  YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDG 85
           YR   GD+I + V   PEL+    V  +G I  P +  +    +T+ E++ ++      G
Sbjct: 56  YRFYPGDEIEMTVPSAPELNKTATVQPDGRITVPLVQPVMAADRTIGELQASLSQAYA-G 114

Query: 86  YLINPNVSVSILEYRPF--FVNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTN-LF 142
            L+ P V +S+    P   FV G+V  PG +         +AI  AGGF   A +   + 
Sbjct: 115 TLLRPQVQISVKATAPLKVFVGGEVGNPGVFDMAGDGDALRAIIQAGGFKTTAKRNQVVI 174

Query: 143 ISSSDDPEAKPTKATLLSKL-QPG 165
           I    D  A    A LL  L  PG
Sbjct: 175 IRRGPDGRAMMRTADLLRGLTSPG 198