Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., polysialic acid transport protein kpsD precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 16  PSLAVANDDFYRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKT----- 70
           PS+ +A    YRLG GD++ I ++   + +   ++S  G I+   +G + L G T     
Sbjct: 118 PSVNLATPTNYRLGPGDEVIIDIWGASQNTIRQQISPEGTINIQKIGPVNLSGMTVSAAN 177

Query: 71  --LEEVKTTIHDGLLDGYLINPNVSVSILEYRPFFVN--GQVMKPGSYPYHPGLTVNKAI 126
             L+     I++GL +      ++ +++   R   +N  G+V++PG+Y      TV  A+
Sbjct: 178 DYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHAL 237

Query: 127 TIAGGFTERASKTNL 141
             AGG ++  S  N+
Sbjct: 238 YRAGGVSDIGSLRNV 252



 Score = 36.6 bits (83), Expect = 1e-06
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFIS 144
           V+G+V +P SYPY   +T+   I  AGG  E AS   + +S
Sbjct: 472 VHGEVAQPDSYPYADNMTLEDLIIQAGGLKEAASTVRIDVS 512



 Score = 34.3 bits (77), Expect = 5e-06
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKATLLSKLQ 163
           +NG VM P +  Y  G  V+  +  AGG+++ A K+  FI   +    K  K +   +++
Sbjct: 688 INGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNAKKSKKFIVYMNGQVTK-VKGSGKKQIE 746

Query: 164 PG 165
           PG
Sbjct: 747 PG 748