Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 837 a.a., polysaccharide export protein (RefSeq) from Shewanella sp. ANA-3

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 26  YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDG 85
           Y +G GD + +Q + +    F   V  +G + +P LG I L G T  E +  +   +   
Sbjct: 149 YMMGPGDTLNVQFFGKENNQFTLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQS 208

Query: 86  YL-INPNVSVSILEYRPFFVNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFIS 144
            + I  N+++  L     FV G   KPGSY      T+ +A+ I+GG  +  S  ++ + 
Sbjct: 209 MIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQALFISGGVNQIGSLRDIQLK 268

Query: 145 SSDDPEAKPTKATLL--------SKLQPGDILTV 170
            S     +     LL         +LQ GD++ V
Sbjct: 269 RSGKTIGRLDLYDLLLRGDASGDMRLQSGDVVFV 302



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKA---TLLS 160
           V GQV  P ++ +  GLT  + + ++GG  +RA ++  +I  +D     P  +   T  S
Sbjct: 735 VMGQVQHPSTHRFKTGLTFEQYLALSGGPRKRADESRTYILKADGSVQMPESSLWFTGGS 794

Query: 161 KLQPGDILTV 170
            ++PGD + V
Sbjct: 795 SMEPGDTIVV 804



 Score = 31.2 bits (69), Expect = 5e-05
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 98  EYRPFFVNGQVMKPGSYPYHPGLTVNKAITIAGGFT-ERASKTNLFISSSDDPEAKPTKA 156
           E R   + G+V  PG+Y    G T+ + +  AGG T + A ++ +F+  S   + +   A
Sbjct: 598 ETRWVTIKGEVKFPGTYSIQRGETLKQVLARAGGMTSDAAPRSAVFLRKSIQQKEQQELA 657

Query: 157 TLLSKLQ 163
            L  +L+
Sbjct: 658 KLADELR 664



 Score = 29.3 bits (64), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKATLLS--- 160
           +NG V  PG YP      V + +  AGG  E A   +  ++     E    K   +    
Sbjct: 509 INGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVKVEHVQLSL 568

Query: 161 ------------KLQPGDILTV 170
                       KLQ  DILTV
Sbjct: 569 DRVMQNDPAANIKLQSRDILTV 590



 Score = 28.1 bits (61), Expect = 4e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 69  KTLEEVKTTIHDGLL----DGYLINPNVSVSILEYRPFFVNGQVMKPGSYPYHPGLTV 122
           KT+  V  T + GL     +G L+N   + S ++     V+G V++PG Y +  GLTV
Sbjct: 359 KTVVSVDLTENSGLSTLAKNGDLLNVRSASSRID-NAITVSGAVIRPGKYQWTNGLTV 415