Pairwise Alignments

Query, 469 a.a., sugar transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., lipopolysaccharide biosynthesis protein from Rahnella sp. WP5

 Score = 81.6 bits (200), Expect = 5e-20
 Identities = 103/477 (21%), Positives = 203/477 (42%), Gaps = 45/477 (9%)

Query: 15  SALSVFALIAVQTRFLSPEHYGVLAVAMVVLELVRAFSAQWLNTSMLRLYPGYSDREQVQ 74
           S +  F +  V  + L+P  YG+L+V+++V +  ++     + TS++R         +V 
Sbjct: 26  SQVITFVIFIVLAKILTPSIYGMLSVSLLVTQFFKSVLFDSIATSIVRK----KSPSEVD 81

Query: 75  LVQSISLLVIIGSLLGFIVIAATLFIYQQLNWERLL-------VLSALLSVKSIFQYQLE 127
              ++ L   +      IV  A  FI   +N  +L        V+  +  +    +  L 
Sbjct: 82  YNSALFLCFSLSVPAFLIVFFAAPFIEAYMNVPQLANVIRGTGVIILVSGLSRTHEAWLS 141

Query: 128 LSRLNERLSVYRQATV-LQSISAVVLSILSLSWAATIESALFALTLSFGIGALCLGLPQR 186
            + +   L++    ++ +  I  VV++    + A+ +   +    +S  + AL +  P +
Sbjct: 142 HNMMFRPLAIRSMTSISIGGIVGVVMAYNGFAVASLVVQQVVTSLIS--LVALWVATPWK 199

Query: 187 PKWHIAM--LKRLLAYGIPIMLAGGIGVLGGRIDRLFIAHFVGMNETGVYAAQ---ANLL 241
           P+  I+   +K  L +   + L+          D  FI +F+G    G+Y+A     N L
Sbjct: 200 PRMKISRESMKESLGFSKHVALSNVTNFANQNSDVFFITYFLGSAAAGIYSAGKRIVNTL 259

Query: 242 MGVLGLVFMVISMPLYPNLAKHAEDKIALVSQHKTYLHLLVTLTFPALLGLGILQDEIIR 301
             VL    M +S+P +   +++  D      ++    +L V +T PA +GL  L  +I  
Sbjct: 260 NLVLASALMRVSLPAF---SRYKNDINEFGKKYLQATYLTVLVTAPAFVGLATLSHDITF 316

Query: 302 LFLGEQYLSRSSELFWVLAIAVYLINFKGHYLDHGLQFL-----LQTRKLLWVSLSGLIA 356
           L LG +++  +S     +  AV  +   G+Y +H + F       Q R  L  +++ ++A
Sbjct: 317 LLLGHKWM--NSVPVMQIVSAVGFVTSIGYY-NHSVMFARDKPEWQARLTLVYAITNVVA 373

Query: 357 SIFLLPLMLNQFGMFGAAITLLIVSGLVAILSFISSW------RSGYRYAIGMDGIKVII 410
             F        F  FG   T L+ S    +L  IS+W         ++  +  + I  +I
Sbjct: 374 FYF--------FVRFGLIATALVFSIRTVLLYPISAWCALTLLNLTFKQYV-KELITPVI 424

Query: 411 SALLMGGYLYLVKQWPLAIHSLFALAFYVTTSLLFYGICLWCLNAFNARQRLFSIWR 467
            ++LM   L  V+Q+ +   S F L   +    + Y   ++  ++ + R  +FS+ R
Sbjct: 425 CSVLMCMILVAVQQYAVLSESWFGLMIKIGIGAVCYFALIFTFSSVSKRTMIFSLAR 481