Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1008 a.a., RND multidrug efflux transporter; Acriflavin resistance protein from Pseudomonas fluorescens FW300-N2E2

 Score =  624 bits (1609), Expect = 0.0
 Identities = 357/1015 (35%), Positives = 594/1015 (58%), Gaps = 18/1015 (1%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M  +D  ++RPV A V+S+L+ + G  +++KL +R+ P +E+ +++V+T Y GA+A  I+
Sbjct: 1    MAFTDPFIRRPVLATVVSLLIVLLGFQAWSKLPLRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
              IT  ++  LA   GID +TSVSR   S I+V   +G + +   +++       +  LP
Sbjct: 61   GYITQPMQQSLASAEGIDYMTSVSRQNFSVISVYARIGSNSDRLFTELLAKANEVKNQLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            ++A+DP + +      A +YI+  S E++  Q+TDY+ RV+  + + + G++  ++ G  
Sbjct: 121  QDAEDPVLSREAADASALMYISFFSKELNNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + + P  +AG G+  +D+++A+ + N  S  G+V+ +  V S+      +SAE F
Sbjct: 181  VFAMRLWLDPVKLAGFGLTAADVTNAVRQHNFLSAAGEVKGEYIVTSINANTELKSAEAF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              + +K   D   + L+DVA V +GAEN ++     G  +V +GI     ANPL+V K V
Sbjct: 241  AAIPLKTDGDSR-VLLRDVARVEMGAENYDTISSFGGTPSVYIGIKATPGANPLDVIKEV 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
             + +  ++  LP   +  I YD+T+FI+ SI EV  TLF    +VI+V+++F+G LR+ +
Sbjct: 300  RKIMPDMEAQLPANLKAEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLFLGALRSVV 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP VT+P+S+I         G+S+NL+TL+A++L+IGLVVDDAIVVVENI  HIE G+ P
Sbjct: 360  IPVVTIPLSMIGVMFFMQLMGYSMNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKTP 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
              AA +G RE+   V++ T+ L  V+ PI  + G+ G LF EF++ LA AV+ S ++ALT
Sbjct: 420  FDAAIEGAREIAMPVVSMTITLAAVYAPIGLLQGLTGALFKEFALTLAGAVVISGIVALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ + LL+ +  P      +D +F RL+S Y++++   +  R    V     +    
Sbjct: 480  LSPMMCAMLLRHDENPSGLAHRLDMVFERLKSRYQRMLHGTLNTRPVVLVFAVIVLLLIP 539

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMD--LVEQRLMPLLGQGFLKSFS 598
             L+    ++L P ED+G+IF        T+ + +    D  +   +  P     +  SF 
Sbjct: 540  VLIMFTKSELAPDEDQGIIFMMANAPQPTNLDYLNTYTDHFITIFKEFP----EYYSSFQ 595

Query: 599  IQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF-MPGFRG 657
            I      G  G Q+G    +L+ WN+R+ T  E L +V+  L  +P +++F F +P   G
Sbjct: 596  I-----NGYNGVQSGIGGFLLKPWNERSRTQMEILPEVQAKLESVPGLQIFGFNLPSLPG 650

Query: 658  -GSNEPVQFVLGG-SDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRA 715
             G   P  FV+    DY+ L   AE++++ A +S      DID +   PE+VV ID+ +A
Sbjct: 651  TGEGLPFAFVINSPKDYATLLEIAERVKKRALESGKFAFMDIDLAFDKPEVVVDIDRAKA 710

Query: 716  AELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATG 775
            A++G+S++ +  TL  +LG  ++  F   G  Y V  + +    +N   L+  Y++ A G
Sbjct: 711  AQMGVSMQDLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPFRDNPDWLNNYYVKNAKG 770

Query: 776  ELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDI 835
            E + L T+ ++ + A   +L  + +  +VTI+       ++G+A++ + Q A+E  P   
Sbjct: 771  ESLPLSTLIKVSDRARPRQLNQFQQLNAVTISG--FPVVSMGEAIETVRQIAREEAPAGF 828

Query: 836  SVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLG 895
            +  Y+G S+ F +  S++ + FALAL + +LVLAAQFESF +PLV+++TVP+ + G  + 
Sbjct: 829  AFDYAGASRQFVQEGSALWVTFALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIP 888

Query: 896  LFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGVEFEKAIIDASARRLRPI 954
            LF+    MNIY+Q+G++ LIG+++K+GILIVEFANQL R++ +   +A+  A++ RLRP+
Sbjct: 889  LFLGWSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRREQNLTPREAVEQAASIRLRPV 948

Query: 955  LMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS 1009
            LMT    + G +PLI +TGAG  SR  +GTVI  GM   TL TL V+P +Y L++
Sbjct: 949  LMTTAAMVFGMVPLIFATGAGAVSRFDIGTVIATGMSIGTLFTLFVLPCVYTLLA 1003