Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1054 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

 Score =  470 bits (1210), Expect = e-136
 Identities = 307/1039 (29%), Positives = 525/1039 (50%), Gaps = 39/1039 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S   + RP+ A V+++++ + G +S  KL + + P I  P +++   Y GASA  ++  
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +  V+E QL GI  +  ++S S + G   IT TFE G + +T    +++ +  A   LP+
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120

Query: 122  EADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     +          + I + S +  M R  L++YI   + D  S  +GV    V G 
Sbjct: 121  EVQQQGIRVTKSVRNFLMVIGVVSRDGSMTREDLSNYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTV------MSVRTARG 233
             Y  M + + P  +    +   D+S A+  +N++   GQ+     +       ++     
Sbjct: 181  QY-AMRIWLDPAKLNNFNLTPVDVSTAITAQNVQIASGQLGGLPAMPGQQLNATIIGKTR 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             Q+AE F+ +++K   DG+ + + DVADV +G EN +   + +G     + +   + AN 
Sbjct: 240  LQTAEQFKAILLKVNPDGSQVRVGDVADVALGGENYSINAQFNGAPASGLAVRLATGANA 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            L+ AK + + VD ++ F P+G  +   YD+T  +  SI  V  TL     LV LV+++F+
Sbjct: 300  LDTAKALRKTVDDLKPFFPQGLEVVFPYDTTPVVSESIKGVVETLVEAIVLVFLVMFLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RAT+I  +TVPV L+  F     FGFSIN +T+  ++L+IGL+VDDAIVVVEN+   
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 414  I-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            + E G  P  A  K   ++  A++   LVL  V LP++F  G  G+++ +FS+ +  A+ 
Sbjct: 420  MSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMA 479

Query: 473  FSSLIALTLTPVLGSKLLKANVKP----------GRFNQLIDRLFARLESGYRQVVSRAI 522
             S L+AL  TP L + +LK   K           G FN+  DR     E G   ++    
Sbjct: 480  LSVLVALIFTPALCATMLKPIPKGEHGTPKRGFFGWFNRTFDRGVRSYERGVGNMLKHKA 539

Query: 523  RWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVE 582
             +  A  +++     G   L   +P    P ED+GV+F+ V+    +S  R    +D + 
Sbjct: 540  PYLLAYIIIVV----GMVWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDKMR 595

Query: 583  QRLMPLL-----GQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTV--TAQEALSQ 635
            + L+        G G    F++    F G  G  +G   ++L+ W +R    T  +   +
Sbjct: 596  EFLLRPSKDGGEGDGVASVFTVTGFNFAGR-GQSSGLAFIMLKPWEERNADNTVFKIAGR 654

Query: 636  VRKALAGIPDVRVFPFMPGFRGGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSP 690
             ++      D  VF F P           F +      G  + +L     +    A +S 
Sbjct: 655  AQQHFFTFRDAMVFAFAPPAVMELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMASQSK 714

Query: 691  FMTGADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDV 750
             +     +     P+  + ID ++A+ LGI++  I++TL + LG   V  F++RG    V
Sbjct: 715  ILAQVRPNGLNDEPQYQLEIDDEKASALGITLSEINNTLSIALGSNYVNDFIDRGRVKRV 774

Query: 751  YLRGDENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANL 810
            Y++G  NS  +  DL + Y+R + G +V      + + V  + +LA YN  +++ I    
Sbjct: 775  YVQGQPNSRMSPEDLKKWYVRNSAGTMVPFSAFAKGEWVYGSPKLARYNGVEAMEILGTP 834

Query: 811  EAGYTLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAA 870
              GY+ G+A+  ++  A++ LP  + +S++G S + + + S    ++AL+LL+ +L LAA
Sbjct: 835  APGYSTGEAMAEVETIAKK-LPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAA 893

Query: 871  QFESFINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN 930
             +ES+  P+ VML VP+G+ G  +   + G   ++Y Q+G++  IG+  KN ILIVEFA 
Sbjct: 894  LYESWSIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAK 953

Query: 931  QLRDRGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGM 990
            +L ++G    +A I+A   RLRPI+MT+   + G +PL +STGAG  S+ A+GT +  GM
Sbjct: 954  ELHEQGRTLMEAAIEACRMRLRPIIMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGM 1013

Query: 991  GFATLVTLLVIPAMYRLIS 1009
              AT++ +  +P  +  +S
Sbjct: 1014 LTATILAIFWVPLFFVTVS 1032