Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1048 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

 Score =  492 bits (1266), Expect = e-143
 Identities = 327/1029 (31%), Positives = 537/1029 (52%), Gaps = 42/1029 (4%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            + RP+ A V+++++ + G +S ++L + + PDI  P V +S  Y GASA  +E  +T V+
Sbjct: 6    IDRPIFAWVIAIVIMLAGALSISQLPLEQYPDIAPPTVRISATYTGASAKTVEDSVTQVI 65

Query: 68   EDQLAGISGIDEIT-SVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADDP 126
            E Q+ G+  +  ++ S S +G + I++TF  G + +     +++ + +A+  LP+     
Sbjct: 66   EQQMKGLDNLTYMSASSSSDGSASISLTFTAGTNPDVAQMQVQNKLQQAESRLPQSVQSE 125

Query: 127  QVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVM 184
             +    G     +   L+S    +  TQ+ DYI   LLD  S I GV  V   G  Y  M
Sbjct: 126  GLTVTKGGSDFLMIAALASDNPSVTGTQIGDYISSTLLDSISRIDGVGDVQTLGSGY-AM 184

Query: 185  YVRIKPELMAGRGVATSDISDALNKENLESPGGQ------VRNDSTVMSVRTARGYQSAE 238
             + + P L+    +  SD+S AL  +N E   GQ      V+      ++      Q+ E
Sbjct: 185  RIWLDPALLEKYALMPSDVSTALEAQNTEVSAGQLGAMPAVKGQQLNATISARSKLQTVE 244

Query: 239  DFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAK 298
            +F  +VVK  SDG  + L DVA V +G+E+ + +   +G    +MG+   + AN L V +
Sbjct: 245  EFRNVVVKSTSDGAVVLLGDVARVELGSESYDVSSALNGKPAAAMGVQLAAGANALNVGE 304

Query: 299  RVHEEVDKVQQFLPKGTRL--AIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQL 356
             V  ++ +++ F P   +L   I YD+T F+  SI EV  +L     LV+L++++F+  L
Sbjct: 305  AVKAKLKELEAFYPTELQLKNVIAYDTTPFVSLSIEEVVKSLGEAIVLVVLIMFLFLQNL 364

Query: 357  RATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHI-E 415
            RATLIPA+TVPV L+  F     FG+SIN +T+ A++L+IGL+VDDAIVVVEN+   + E
Sbjct: 365  RATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERVMGE 424

Query: 416  RGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSS 475
            +G   L A  +   E+  A++   LVL  VF+P++F  G  G+++ +FSV +  A++ S 
Sbjct: 425  QGLSALDATRQSMDEITSALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVSAMVLSV 484

Query: 476  LIALTLTPVLGSKLLKANVKPGR-----FNQLIDRLFARLESGYRQVVSRAIR-----WR 525
            L+A+TLTP L + LLK +   G      F    +R F R    Y++ V   ++     W 
Sbjct: 485  LVAMTLTPALCATLLKPSDGQGHGAQRGFFGWFNRTFERAAEAYKRQVGGILQRGRVGWL 544

Query: 526  WAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRL 585
                V++   +G        +P    P ED+G++ + V+     + +R  A   +V+Q  
Sbjct: 545  VYGLVLLLMAVG-----YFSLPTSFLPDEDQGILMAQVQLPVGATDSRTQA---VVKQFE 596

Query: 586  MPLLGQGFLKSF-SIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKA---LA 641
              LL Q  +++  SI      GN+ +     I  L+DW++RT   Q+A S  ++A   L+
Sbjct: 597  SYLLEQPEVEALISISGLGMNGNSQNSARAFIR-LKDWSERTGAGQDAASFAQRATMALS 655

Query: 642  GIPDVRVFPFMPGFRGGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSPFMTGAD 696
             I D  VF   P    G  +   F L      G  +  L    EKL E A + P + G  
Sbjct: 656  SIGDANVFVMQPPAVRGLGQTSGFDLQLKDLAGLGHDTLVAAREKLIELANQDPRLLGVR 715

Query: 697  IDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDE 756
             +  +  P+L V+ID ++A  L +S   I+ TL   LGG  V  F+ +G    VY++G+ 
Sbjct: 716  SNGLDDAPQLKVSIDDRKAGALSLSTSDINTTLSTALGGTYVNDFLNQGRVKKVYVQGEA 775

Query: 757  NSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTL 816
             +   AADL   ++R +  E+V   +         +  L  YN   S+ +  +   G + 
Sbjct: 776  AARMQAADLEHWFVRNSNDEMVPFSSFASSSWSYGSPLLERYNGNASLEVVGDPAPGVSS 835

Query: 817  GQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFI 876
            G A+D +    ++ LP  I   ++G+S   + + S   +++ +++L  +L LAA +ES+ 
Sbjct: 836  GDAMDAVQALVKQ-LPEGIGYEWTGQSYQLRLSGSQAPLLYGISVLFVFLCLAALYESWS 894

Query: 877  NPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRG 936
             P  VML VP+GV G  L   V G   ++Y Q+G++  +G+  KN ILIVEFA  L+++G
Sbjct: 895  VPFSVMLVVPLGVVGAVLATRVSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQEQG 954

Query: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996
                +A + A  +RLRPILMT+   + G +PL +S+GAG   R A+GT +  GM  AT++
Sbjct: 955  NSLREATLIAVRQRLRPILMTSLAFMFGVLPLALSSGAGSAGRQAIGTGVLGGMLSATVL 1014

Query: 997  TLLVIPAMY 1005
             +  +P  +
Sbjct: 1015 GIFFVPLFF 1023