Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1008 a.a., RND multidrug efflux transporter; Acriflavin resistance protein from Pseudomonas fluorescens FW300-N1B4

 Score =  626 bits (1614), Expect = 0.0
 Identities = 362/1017 (35%), Positives = 597/1017 (58%), Gaps = 22/1017 (2%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M  +D  ++RPV A V+S+L+ + G  +++KL +R+ P +E+ +++V+T Y GA+A  I+
Sbjct: 1    MAFTDPFIRRPVLATVVSLLIVLLGFQAWSKLPLRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
              IT  ++  LA   GID +TSVSR   S I++   +G + +   +++       +  LP
Sbjct: 61   GYITQPMQQSLASAEGIDYMTSVSRQNFSVISIYARIGANSDRLFTELLAKANEVKNQLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            ++A+DP + K      A +YI+  S E+   Q+TDY+ RV+  + + + G++  ++ G  
Sbjct: 121  QDAEDPVLSKEAADASALMYISFFSDELSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + + P  +AG G++ SD+++A+ + N  S  G+V+ +  V S+      +SAE F
Sbjct: 181  VFAMRLWLDPVKLAGYGLSASDVTNAVRQYNFLSAAGEVKGEYVVTSINANTELKSAEAF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              + +K   D   + L+DVA V +GAEN N+     G  +V +GI     ANPL+V + V
Sbjct: 241  GAIPLKVDGDSR-VLLRDVARVEMGAENYNTISSFGGTPSVYIGIKATPGANPLDVIREV 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
             + + +++  LP   +  I YD+T+FI+ SI EV  TLF    +VI+V+++F+G LR+ +
Sbjct: 300  RKIMPELEAQLPPNLKGEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLFLGALRSVV 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP VT+P+S+I         G+SINL+TL+A++L+IGLVVDDAIVVVENI  HIE G+ P
Sbjct: 360  IPVVTIPLSMIGVMFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKTP 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
            L AA +G RE+   V++ T+ L  V+ PI F+ G+ G LF EF++ LA AV+ S ++ALT
Sbjct: 420  LDAAIEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVVISGVVALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPV--VIAACIGG 538
            L+P++ + LL+ +  P      +D +F  L+  Y+ ++   +  R    V  VI  C+  
Sbjct: 480  LSPMMCALLLRHDENPTGLAHRLDVIFEGLKRRYQSLLHGTLNTRPVVLVFAVIVLCL-- 537

Query: 539  SYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFS 598
               L++   ++L P ED+GVIF               AN+D +       L     K F 
Sbjct: 538  IPVLLKFTKSELAPDEDQGVIFMMASAP-------QTANLDYLNTYTDEFL--TIFKEFP 588

Query: 599  IQSPAF--GGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF-MPGF 655
                +F   G  G Q+G    +L+ WN+R  T  + L +V+  L  IP +++F F +P  
Sbjct: 589  EYYSSFQINGFNGVQSGIGGFLLKPWNERDRTQMQILPEVQSKLESIPGLQIFGFNLPSL 648

Query: 656  RG-GSNEPVQFVLGGSD-YSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQ 713
             G G   P QFV+  ++ Y  L    +++++ A +S      D+D +   PE+VV ID+ 
Sbjct: 649  PGTGEGLPFQFVINSANTYESLLEVTDRVKKRAMESGKFAFVDVDLAFDKPEVVVDIDRA 708

Query: 714  RAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTA 773
            +AA++G+S++++  TL  +LG  ++  F   G  Y V  + +    +N   L+  Y++  
Sbjct: 709  KAAQMGVSMQALGGTLATLLGEAEINRFTIEGRSYKVIAQVERPFRDNPDWLNHYYVKNT 768

Query: 774  TGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPN 833
             GEL+ L T+  + + A   +L  + +  S  ++       ++G+A+D + Q A+E  P 
Sbjct: 769  KGELLPLSTLITVTDRARPRQLNQFQQLNSAILSG--VPLVSMGEAIDTVRQIAREEAPA 826

Query: 834  DISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGF 893
              +V Y+G S+ + +  S++ + FALAL + +LVLAAQFESF +PLV+++TVP+ + G  
Sbjct: 827  GYAVDYAGASRQYVQEGSALWVTFALALAIIFLVLAAQFESFRDPLVILVTVPLSICGAL 886

Query: 894  LGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGVEFEKAIIDASARRLR 952
            + LF+    MNIY+Q+G++ LIG+++K+GILIVEFANQLR ++G+   +A+ +A+A RLR
Sbjct: 887  IPLFLGWSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRKEKGLSPREAVEEAAAIRLR 946

Query: 953  PILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS 1009
            P+LMT    + G +PLI++TGAG  SR  +GTVI  GM   TL TL V+P +Y L++
Sbjct: 947  PVLMTTAAMVFGMVPLIIATGAGAVSRFDIGTVIATGMSIGTLFTLFVLPCIYTLLA 1003