Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Pseudomonas stutzeri RCH2

 Score =  478 bits (1229), Expect = e-138
 Identities = 315/1029 (30%), Positives = 523/1029 (50%), Gaps = 26/1029 (2%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S   + RP+ A V+++++ + G +S  KL V + P I +P V +S  Y GASA  ++  
Sbjct: 1    MSRFFIDRPIFAWVIALVIMLAGGLSILKLPVNQYPSIAAPAVGISVSYPGASAQTVQDT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +  V+E QL GI G+  I+S S + G   ITVTF+ G + +     +++ +  A   LP+
Sbjct: 61   VVQVIEQQLNGIDGLRYISSESNSDGSMTITVTFDQGTNPDIAQVQVQNKLQLATPLLPQ 120

Query: 122  EADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     +          + I L S++  +D+  L +YI   + D  S   GV    V G 
Sbjct: 121  EVQQQGIRVTKAVRNFLIVIGLVSTDGSLDQRDLANYIVANMQDPISRTKGVGDFQVFGA 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTV------MSVRTARG 233
             Y  M + + P  +    +   D+S A+  +N++   GQ+     +       +V     
Sbjct: 181  QY-AMRIWLDPAKLNSFSMTPVDVSTAIQAQNVQISSGQLGGLPALPGQQLNATVIGKTR 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             Q+ E F  +++K  SDG+ + L DVA V +G E    +   +G     + +   + AN 
Sbjct: 240  LQTPEQFRNILLKVNSDGSQVRLGDVARVELGGETYAVSAHFNGKPAAGLALKLATGANA 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            L+  + V + +++++ F P G  +   YD+T  I  SI+ V  TL     LV LV+Y+F+
Sbjct: 300  LDTVEGVRKTIEELKPFFPPGVEVVYPYDTTPVISASITGVMHTLLEAFVLVFLVMYLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RATL+P + VPV L+  F     FGFSIN +T+ A+IL+IGL+VDDAIVVVEN+   
Sbjct: 360  QNFRATLVPTLAVPVVLLGTFGVLAVFGFSINTLTMFAMILAIGLLVDDAIVVVENVERV 419

Query: 414  I-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            + E G  PL A  K   ++  A+I   +VL  V LP++F  G  G+++ +FS+ +  A++
Sbjct: 420  MREEGLSPLEATRKSMGQIQGALIGIGVVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMV 479

Query: 473  FSSLIALTLTPVLGSKLLKANVKPGR-----FNQLIDRLFARLESGYRQVVSRAIRWRWA 527
             S L+AL  TP L + LLK   K        F    +R F R  +GY + V   ++ +  
Sbjct: 480  LSVLMALIFTPALCATLLKPIDKDDHHEKRGFFGWFNRTFERSVNGYERGVKAVLKRKAP 539

Query: 528  APVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMP 587
              ++    +G    L   +P+   P ED+GV+F+ V     ++  R   ++D +   L+ 
Sbjct: 540  FLLLYVLIVGVMVVLFTRIPSAFLPEEDQGVLFAQVMTPSGSTAERTQQSIDAMRSYLLE 599

Query: 588  LLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKA---LAGIP 644
              G      F++   +F G  G  +G   + L+ W++RT       +  ++A    A   
Sbjct: 600  EEGDIVRSVFTVTGFSFAGR-GQSSGIAFIGLKPWSERTNKEDSVFALAQRAQQHFASFR 658

Query: 645  DVRVFPFMPG--FRGGSNEPVQFVL---GGSDYSELKTWAEKLEEEAEKSPFMTGADIDY 699
            D +VF F P      G+     F L    G     L+   +K  + A +SP +T    + 
Sbjct: 659  DAQVFAFAPPAVMELGNATGFNFFLQDRAGVGQQVLQQARDKFMQLASQSPVLTRVRPNT 718

Query: 700  SEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSF 759
                P+  V ID ++A  LGIS+  I+ TL +  GG+ V  F++RG    VYL+G  ++ 
Sbjct: 719  LRDEPQYQVLIDDEKARVLGISLAEINSTLSIAWGGRYVNDFIDRGRVKKVYLQGVADAR 778

Query: 760  NNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQA 819
             N  DL++ Y+R   GE+V        +    + +L+ YN   ++ +      GY+ G A
Sbjct: 779  MNPEDLAKWYVRNDAGEMVPFSAFASGEWTYGSPKLSRYNGVSAIEMLGEPAPGYSSGDA 838

Query: 820  LDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPL 879
            +  +++   + LP  +  S++G+S + +   S    ++AL+LLV +L LAA +ES+  P 
Sbjct: 839  MAEVERIVAQ-LPPGVGYSWTGQSYEERLAGSQTLALYALSLLVVFLCLAALYESWSIPF 897

Query: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEF 939
             VML VP+G+ G      + G    ++ Q+G++  IG+  +N ILIVEFA  L ++G+ +
Sbjct: 898  SVMLVVPLGIVGALAFTMLRGLSNEVFFQVGLVTTIGLSARNAILIVEFAKALHEQGMSY 957

Query: 940  EKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLL 999
              A + A   RLRPI+MT+   + G +PL V++GAG  S+ A+GT +  GM  A ++ + 
Sbjct: 958  ADAALQACRMRLRPIIMTSLAFILGVVPLAVASGAGAGSKHAIGTGVIGGMLTAAVLAIF 1017

Query: 1000 VIPAMYRLI 1008
             IP  Y +I
Sbjct: 1018 WIPLFYVMI 1026