Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1018 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  640 bits (1651), Expect = 0.0
 Identities = 365/1024 (35%), Positives = 591/1024 (57%), Gaps = 24/1024 (2%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M  +D  ++RPV A V+S+L+ + G+ +F  L +R+ P +ES +++V+T Y GA+A  I+
Sbjct: 1    MAFTDPFIRRPVLASVISLLIVLLGMQAFNSLTIRQYPQMESALITVTTAYPGANAETIQ 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
              IT  L+  LA   G+D +TSVS+   S I+V   +G D +   +++       +  LP
Sbjct: 61   GYITQPLQQSLASAEGVDYMTSVSQQNASVISVYARIGADTDRLYTELLSQANSVKNQLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            + A+DP + K      A +YI+  S ++   Q+TDY+ RV+  + + + G++  ++ G  
Sbjct: 121  QAAEDPVLNKQAADSTALMYISFYSDQLSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + + P  +A  GV+  D+++A+ K N  S  G+V+    V S+      ++ E F
Sbjct: 181  VFAMRLWLDPVKLAAYGVSAGDVNEAVRKYNFLSAAGEVKGQYVVTSINADTELKTPEAF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              + +K   D   + L DVA V +GAE+ NS    DGI +V +GI     ANPL+V K V
Sbjct: 241  AAIPLKTQGDSR-VLLGDVARVEMGAESYNSISSFDGIPSVYIGIKGTPSANPLDVIKEV 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
               + +++  LP G + +I YD+T FI+ SI EV  TL     +VI+V+++F+G LR  L
Sbjct: 300  RAIMPQIEAQLPPGLKASIAYDATEFIQASIDEVVKTLAEAAVIVIVVVFLFLGSLRTVL 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP VT+P+S+I         G+SINL+TL+A++L+IGLVVDDAIVVVENI  HIE+G+ P
Sbjct: 360  IPVVTIPLSMIGVMFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEQGKSP 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
              AA  G RE+   V+  T+ L  V+ PI F+ G+ G LF EF++ LA AV+ S ++ALT
Sbjct: 420  FQAAIDGAREIAMPVVTMTITLAAVYAPIGFLQGLTGALFQEFALTLAGAVLISGVVALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ SKLL+    P  F   +D LF RL+  Y++ +   +  R    V     +    
Sbjct: 480  LSPMMCSKLLRHEENPSGFAHRLDELFERLKQRYQRALHGTLNTRPVVLVFAVLVLALIP 539

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQ 600
             L+    ++L P ED+G++F         + + + A  D   +           KSF   
Sbjct: 540  ALLMFTESELAPEEDQGIVFMMASAPKTANLDYLNAYTDQFLE---------IFKSFPEY 590

Query: 601  SPAF--GGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF-MPGFRG 657
               F   G  G Q+G    +L+ W++R  +  E L +V+  L  +P +++F F +P   G
Sbjct: 591  YSWFQINGFDGVQSGIGGFLLKPWDERERSQMEILPEVQAKLDRLPGLQIFGFNLPSLPG 650

Query: 658  -GSNEPVQFVLG-GSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRA 715
             G   P QFV+   +DY  L    E++ + AE+S      D+D +   PE+VV ID+++A
Sbjct: 651  TGEGLPFQFVINTANDYETLLQVTERIRKRAEESGKFAFLDVDLAFDKPEIVVEIDREKA 710

Query: 716  AELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATG 775
            A++G+S++ +  TL  +LG  ++  F   G  Y V  + +    +N   LS  Y+R   G
Sbjct: 711  AQMGVSMEELGLTLSTLLGEGEINRFTIEGRSYKVIAQVERAYRDNPDWLSNYYVRNGQG 770

Query: 776  ELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGY---TLGQALDFLDQKAQEILP 832
            +++ L T+ ++ + A   +L  + +     + A +  G+   ++G+A+D L   A+E  P
Sbjct: 771  QMLPLSTLIKVRDRARPTQLKQFQQ-----LNAAMIQGFPIVSMGEAIDTLQTIAREEAP 825

Query: 833  NDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGG 892
            +     Y+G S+ + +  +++ + FALAL V +LVLAAQFESF +PLV+++TVP+ V G 
Sbjct: 826  DGFGFDYAGASRQYIQEGNALYMTFALALAVIFLVLAAQFESFRDPLVILVTVPLSVCGA 885

Query: 893  FLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGVEFEKAIIDASARRL 951
             + LF+    MNIY+Q+G++ LIG+++K+GI+IVEFANQL R++G+   +A+ +A+A RL
Sbjct: 886  LVPLFLGLSSMNIYTQVGLVTLIGLISKHGIMIVEFANQLRREQGLSRREAVEEAAAIRL 945

Query: 952  RPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGS 1011
            RP+LMT   T+ G +PLI+++GAG  SR  +G VI  GM   TL TL V+PA+Y L++  
Sbjct: 946  RPVLMTTAATVFGMVPLIIASGAGAVSRFDIGLVIATGMSVGTLFTLFVLPAVYDLVAQP 1005

Query: 1012 TQAP 1015
             ++P
Sbjct: 1006 DRSP 1009