Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1044 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Pseudomonas syringae pv. syringae B728a

 Score =  474 bits (1219), Expect = e-137
 Identities = 309/1034 (29%), Positives = 528/1034 (51%), Gaps = 32/1034 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S   + RP+ A V+++++ + G +S + L + + P I  P + +   Y GASA  ++  
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +  V+E QL GI  +  ++S S + G   IT TF  G + +T    +++ +  A   LP+
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 122  EADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     +          + I L S +  M +  L +YI   + D  S  SGV    V G 
Sbjct: 121  EVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGS 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVR---TARG--- 233
             Y  M + + P  +    +   D+ DA+  +N++   GQ+    ++   +   T  G   
Sbjct: 181  QY-AMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTR 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             Q+AE F  + +K  +DG+ + LKDVA V +GAEN ++  + DG     + I   + AN 
Sbjct: 240  LQTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANA 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            L+ AK +   V  ++ F P G ++   YD+T  +  SI+ V  TL     LV LV+Y+F+
Sbjct: 300  LDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RAT+I  +TVPV L+  F     FGF+IN +T+  ++L+IGL+VDDAIVVVEN+   
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 414  IERGE-KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            +E  +  P  A  K   ++  A++   LVL  V LP++F  G  G+++ +FS+ +  A+ 
Sbjct: 420  MEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMA 479

Query: 473  FSSLIALTLTPVLGSKLLKA-----NVKPGR-FNQLIDRLFARLESGYRQVVSRAIRWRW 526
             S ++AL  TP L + +LK      + +P R F    +R F R    Y + V   ++ +W
Sbjct: 480  LSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKW 539

Query: 527  AAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLM 586
             A +       G   +   +PA   P ED+GVIF+ ++    +S  R    +D + + L+
Sbjct: 540  PAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDQMREYLL 599

Query: 587  PLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAG---- 642
                      FS+    F G  G  +    ++L+ W +R   +  ++ ++ K   G    
Sbjct: 600  TKESGAVKSVFSVNGFNFAGR-GQSSAIAFVMLKPWEERD--SNNSVFELAKRAQGYFFS 656

Query: 643  IPDVRVFPFMP------GFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGAD 696
            + D  VF  +P      G   G +  +Q   GG  + +L     +    A +S  + G  
Sbjct: 657  LRDAMVFAVVPPSVLELGNATGFDVYLQDQ-GGVGHDKLMEARNQFLGMAAQSKILAGVR 715

Query: 697  IDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDE 756
             +     P+  + ID +RA+ LGI++  I++TL + LGG  V  F++RG    VY++GD 
Sbjct: 716  PNGLNDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDA 775

Query: 757  NSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTL 816
             +     DL + Y+R + GE+V             + +L+ YN   +  +      GY+ 
Sbjct: 776  GARMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSS 835

Query: 817  GQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFI 876
            G A++ ++  A++ LP  I +S++G S + + + S    ++AL+LLV +L LAA +ES+ 
Sbjct: 836  GDAMNEVEALAKK-LPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWS 894

Query: 877  NPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRG 936
             P+ V+L VP+GV G  +   + G   +++ Q+G+++ +G+  KN ILIVEFA +L ++G
Sbjct: 895  IPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQG 954

Query: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996
                 A I+A   RLRPI+MT+   + G +PL +S+GAG  S+ ++GT +  GM  A ++
Sbjct: 955  KSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGMITAVIL 1014

Query: 997  TLLVIPAMYRLISG 1010
             +  +P  +  +SG
Sbjct: 1015 AIFWVPLFFVTVSG 1028