Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1056 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Synechococcus elongatus PCC 7942

 Score =  504 bits (1298), Expect = e-146
 Identities = 318/1041 (30%), Positives = 542/1041 (52%), Gaps = 38/1041 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            ++++ +KRPV   V S+L+ + G+V    L + ++PDI  P + VS  Y GA A  +E+ 
Sbjct: 5    IANIFIKRPVLTTVCSILITLGGLVCLPILPIEQLPDIAPPQIQVSATYVGADAETVENT 64

Query: 63   ITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEE 122
            +TS+LE+Q+ G+ G++ ITS S  G S I V F+     +    D+ + V+ A   LP+ 
Sbjct: 65   VTSILENQINGVEGMEYITSTSAIGQSSIQVYFDPTRSPDLAQVDVNNLVSVAIPQLPQA 124

Query: 123  ADDPQVFKNNGSGQASVYINLSS--SEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
                 +     S     +   SS   E D   +++Y+   +    + + GV   ++ G L
Sbjct: 125  VQQQGIAVTQSSPSILQFYTFSSPTGEFDAQFISNYLSLYVQPALARVKGVGQANLFGNL 184

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQV-----RNDSTVMSVRTARGY- 234
               M + + P  +A  G+   D++ AL  +N   P GQV      +D     +   +G  
Sbjct: 185  EYSMRLWLDPNRLASYGLTAEDVASALQSQNQIIPVGQVGGPPVNSDQAYTFILRLQGQG 244

Query: 235  --QSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDAN 292
               + E F  +V+K   DGT + +KDV     GA++ + T  +DG   V +GI     +N
Sbjct: 245  QLSTVEQFNNVVLKTGEDGTLVRVKDVGRAEEGAQSYSVTLAADGRPGVGLGIYQLPGSN 304

Query: 293  PLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIF 352
             ++VA  + E++  ++Q  P G    + +D T F+  S+SEV  TL     LVILV++IF
Sbjct: 305  AIDVANGIREQLAILEQQFPPGLEGKLVFDVTDFVNASLSEVLITLVQAIALVILVIFIF 364

Query: 353  IGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFH 412
            +   R TLIPA+ +PVSL+        FGFSINL+TL  L+L+ GLVVDDAIVVVE I  
Sbjct: 365  LQDWRTTLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLVLATGLVVDDAIVVVEAITE 424

Query: 413  HIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
             IE G+ PL A+ +    +  AVIAT++VL  VF+P++F  G  G ++ +F++ L   ++
Sbjct: 425  KIEEGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFPGATGRIYQQFALTLTFTIL 484

Query: 473  FSSLIALTLTPVLGSKLLKANVKP----GRFNQLIDRLFARLESGYRQVVSRAIRWRWAA 528
             S+  ALT +P + + LL+   +     G+F  L +  F R+  GY + ++   R ++  
Sbjct: 485  ISTFNALTFSPAMSALLLRPAKQQQGWLGKFFNLFNAGFDRVRIGYSKALAIIDRLKFLV 544

Query: 529  PVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPL 588
              + AA +  +  L    P    P+ED+G     + G +    N        V Q++  +
Sbjct: 545  IGLFAAGLALTGWLFTTTPTGFVPTEDQGYFLGLIIGPEGAPLN----YTQKVGQKIQSI 600

Query: 589  L-GQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQV----RKALAGI 643
            L  +  + S ++ S       G+  G     L+ W++R    Q A + V    +K   GI
Sbjct: 601  LETEPSVTSTAVISGFSFIGQGNNLGIYFASLKPWDERKAADQSAEAIVGRINQKLFEGI 660

Query: 644  PDVRVF----PFMPGFR--GGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSPFM 692
             + +V     P +PGF   GG    VQF++     G    S+      K+   A ++P  
Sbjct: 661  SEAQVRTVLPPAIPGFAAYGG----VQFLITDQTGGALSVSQFLESVNKIIGLARENPIT 716

Query: 693  TGADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYL 752
                  ++  +P++ + +D+ R A L I       TL   +GG+ V    + G  Y VY+
Sbjct: 717  RQTFTPFTANSPQIEIDVDRDRLAALNIDFGEALQTLGSYMGGQYVNQITQFGRSYQVYI 776

Query: 753  RGDENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEA 812
            + D         L+QIY+++  G  V L     I +    + + HYN  +S+ + +    
Sbjct: 777  QADNGFRATPQALTQIYVKSRDGATVPLSEFLTIRQQVGPLYITHYNLFRSIEVDSFAAP 836

Query: 813  GYTLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQF 872
            G + GQ ++ L    Q+           G +++     +   ++F L ++V +LVLAA +
Sbjct: 837  GTSTGQVIEGLKDAFQKANFQRFGNGLVGLAREEVSAGTLAPLIFGLGVVVVFLVLAALY 896

Query: 873  ESFINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL 932
            ES+++PL+++LTVP+ + G  + L + G  +++Y+Q+G++MLIG+ +KN ILIV++AN+ 
Sbjct: 897  ESYVDPLIILLTVPLAILGALVFLNLRGIPLDVYAQVGLVMLIGLASKNAILIVDYANEA 956

Query: 933  RDRGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGF 992
              +G+ + +A ++A+  R RPI+MTA ++L G  PL+++ GAG  SR ++GTV+F G+  
Sbjct: 957  VAKGMGYTEAALEAAKLRFRPIVMTAISSLIGFFPLVIAQGAGAASRWSLGTVVFGGLLV 1016

Query: 993  ATLVTLLVIPAMYRLISGSTQ 1013
            AT+++LL++PA Y ++   T+
Sbjct: 1017 ATVLSLLIVPANYVILKSITR 1037