Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1044 a.a., Cation/multidrug efflux pump from Sinorhizobium meliloti 1021

 Score =  508 bits (1309), Expect = e-148
 Identities = 322/1033 (31%), Positives = 547/1033 (52%), Gaps = 34/1033 (3%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M LS   + RP  A V+++++ + G ++  ++ + + P I  P V V+  Y GA+A+++E
Sbjct: 1    MNLSAHFIDRPRLATVIAVVMAIAGALALFQIPIAQFPQITPPEVQVTASYPGANASVLE 60

Query: 61   SQITSVLEDQLAGISGIDEITSVS-RNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSL 119
              + + +EDQ+ G+  +  ++S S  NG   +TVTF +G D      ++++ VA A   L
Sbjct: 61   ESVGAPIEDQVNGVEDMLYMSSSSTNNGTYSLTVTFAVGTDPALAQVNVQNRVALATPRL 120

Query: 120  PEEADDPQVFKNNGSGQASVYINLSSSEMDRTQL--TDYIERVLLDRFSLISGVSSVDVS 177
            P       V     S    + + + S E  R ++  ++Y    + D  + ++GV    + 
Sbjct: 121  PASVTQTGVSVRARSSSMLMGVAIYSPEGTRDEIFISNYAANNIRDAIARVAGVGEAGIF 180

Query: 178  GGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTV------MSVRTA 231
            G  Y  M + + P+ M   G+  +D++ A+  +N ++  GQ+ +          +++   
Sbjct: 181  GPSYS-MRIWMNPDRMQALGLTATDLTSAIQAQNAQASAGQLGSPPATSGQQLQLTIMAQ 239

Query: 232  RGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDA 291
                + EDF  ++V+  ++G  + L+DVA V +GA++ ++    +G  + ++ +   ++A
Sbjct: 240  GRLATEEDFSNIIVRTNTEGALVRLRDVARVELGAQSYDTASTFNGQPSATVVVYQSAEA 299

Query: 292  NPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYI 351
            N L V++ V  E+D++ +  P+    AI +D+T FI  +I E+  TL IT  LV+ V Y 
Sbjct: 300  NALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITETIKEIAITLAITFALVVAVTYF 359

Query: 352  FIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIF 411
            F+   RAT+IP +T+PVSLI  F   Y   +S N ITL A+IL+I LVVDDAI+VVEN+ 
Sbjct: 360  FLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITLFAVILAISLVVDDAIIVVENVK 419

Query: 412  HHIERGEKPLLAAYKGTR-EVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMA 470
              +      +  A + T  +V   ++ATTLVL  +F+PI+F+ G+ G L+ +FSV + + 
Sbjct: 420  RLMAEERLNVHDATRRTMSQVTGPIVATTLVLAALFVPIAFVAGITGQLYRQFSVTILIT 479

Query: 471  VIFSSLIALTLTPVLGSKLLKANVKP-----GRFNQLIDRLFARLESGYRQVVSRAIRWR 525
            + FS++ ALTL+P L   +L++  +      G FN+ +D  F+R  + Y  ++ R  R  
Sbjct: 480  ITFSTINALTLSPALCVLMLRSPREQRSGIFGTFNRGLD--FSR--NWYVAMLDRMSRRL 535

Query: 526  WAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRL 585
            W A V++ A +GG YGL + +P    PSED+G +F  V+  +A S  R    +D V + L
Sbjct: 536  WIASVILLAILGGVYGLFRALPTGFVPSEDQGYLFINVQLPNAASLERTQQALDTVSRIL 595

Query: 586  MPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAG--- 642
                  G   S  I   +  G  G   G VI  L+ W +R  +A+E++  +   L     
Sbjct: 596  QRT--PGVANSVGIAGNSMVGGGGSNAGMVITALKPWGERR-SAEESIDAIMNRLRADFG 652

Query: 643  -IPDVRVFPFMP------GFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGA 695
             IP   V PF P      G  GG +  +Q    G    E+      L  +A ++P +   
Sbjct: 653  RIPTASVVPFNPPAIPGLGTTGGFDLRLQ-ARSGQSQQEIAEVMRGLIVKANQTPGLASV 711

Query: 696  DIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGD 755
               +S   P++ + +D++RA   G+S  +I + ++  LG   V  F      Y V ++ +
Sbjct: 712  FSTFSADVPQVFLNVDRRRAELFGVSTATIFNAMQSHLGSSYVDDFNIFSRVYQVRIQDE 771

Query: 756  ENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYT 815
                +   D+ ++ +R+  GELV L ++  I        +  YN   S +I      G +
Sbjct: 772  PQFRSRIEDIQRLRVRSRNGELVPLQSLLSISTSYGPTAINRYNLFPSASINGQAATGTS 831

Query: 816  LGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESF 875
             GQAL  +   A++ LP      ++G +   ++  +  A++  + L+  YL L  Q+ES+
Sbjct: 832  TGQALATMASLAEQNLPEGFGFEWTGLALQEEQAGNQTALILLMGLIFTYLFLVGQYESW 891

Query: 876  INPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR 935
              PL VML+V + V G  +GL +    +NIY+QIG+++LIG+  KN ILIVEFA + RD+
Sbjct: 892  SVPLAVMLSVAVAVLGALVGLMLASIDINIYAQIGLVLLIGLAAKNAILIVEFAKERRDK 951

Query: 936  GVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATL 995
            G+   +A    +A+R RP+LMTA  ++ G IPL+++TGAG  SR A+G  +F G+   T+
Sbjct: 952  GMATPEAAAAGTAQRFRPVLMTAMASILGVIPLVIATGAGAGSRRAIGMTVFGGLLVGTV 1011

Query: 996  VTLLVIPAMYRLI 1008
            V LL+IP  Y L+
Sbjct: 1012 VGLLLIPVFYVLV 1024