Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1023 a.a., putative multidrug resistance protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  564 bits (1453), Expect = e-164
 Identities = 350/1030 (33%), Positives = 565/1030 (54%), Gaps = 19/1030 (1%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M  +D+ +KRPV A+ +S L+ + G+ +   + VRE P++ + VV+V+T Y GA A +I+
Sbjct: 1    MRFTDIFIKRPVLAVSISFLILLLGLNALKSMQVREYPEMTNTVVNVATSYYGADANLIQ 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
              IT  LE  LA    +D +TS S  G S I V  +L  D N  ++DI   V   +  LP
Sbjct: 61   GFITQPLEQALAQADNVDFMTSESFLGKSNINVYMKLNTDPNGALADILAKVNSVRSQLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            +E++DP V  + GS  + +YI  SS  ++ +QLTDY+ERV+  +   I+GV+ V++ GG+
Sbjct: 121  KESEDPTVTMSTGSQTSVLYIAFSSDSINSSQLTDYLERVVKPQLFTINGVAKVNLYGGI 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + + P  M    ++ +++   L   N +S  GQ     T+ +        + ++ 
Sbjct: 181  QYSMRIWLDPARMGAFNLSATEVMQVLQANNFQSAVGQANGVYTLFNGTADTQVATIDEL 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
            + LV+K + DG  + L D+A+V +   ++     +DG   V +G+     ANPL VA   
Sbjct: 241  KRLVIK-SGDGKVVRLGDIAEVSLDKSHDVYRALADGQEAVVIGLDVTPTANPLTVAADA 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
               + ++++ LP   +  I YDS+  I+ SI+EV  T+     +VI+V+ +F+G LRA L
Sbjct: 300  RTLLPEIERSLPPSIKARILYDSSRAIDESINEVIKTIGEAAIIVIVVITLFLGSLRAVL 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP VT+P+SLI   +    FGFS+NL+TL+A++L+IGLVVDDAIVVVEN+  HI+ GE P
Sbjct: 360  IPIVTIPLSLIGVAIIMQTFGFSLNLMTLLAMVLAIGLVVDDAIVVVENVDRHIKLGESP 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
              AA  GTRE+   VI+ T+ L  V+ PI+ M G+ G LF EF++ LA AV  S ++ALT
Sbjct: 420  FRAAIIGTREIAVPVISMTITLAAVYAPIALMGGITGSLFKEFALTLAGAVFISGIVALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ SK+LK +  P +F   ++   +R+   Y ++++ A+  + A  V  A  +  S 
Sbjct: 480  LSPMMCSKILKEHSAPSKFEHAVESTLSRMTDSYSRMLA-AVMQKRAVVVAFAIIVFASL 538

Query: 541  GLM-QLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSI 599
             L+ + +PA+L P ED+GV+          + + + ANM LV   +         +  S 
Sbjct: 539  PLLFKFIPAELAPKEDKGVVMMMGTAPSTANLDYIQANMTLVTNMIA-------AQPESA 591

Query: 600  QSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF-MPGFRGG 658
             S AF G       F I  L  W++R  + +E        +  IP + V  F MP   G 
Sbjct: 592  ASLAFVGIPNANQAFGIAPLVPWSERDKSQKEMQKFFAGEVKSIPGMAVTTFEMPELPGA 651

Query: 659  SNE-PVQFVL-GGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAA 716
            SN  P+QFV+   S +  L     ++ E+ +KSP+   ++++    +  + + I +  A 
Sbjct: 652  SNGLPIQFVVTTASSFESLFQIGTQVLEKVQKSPYFIYSEMNLKFDSGSMRIHIKRDLAG 711

Query: 717  ELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATGE 776
              G++++ I  TL  M+    V      G  Y+V  + +     N   L+  Y++ A G 
Sbjct: 712  TYGVTMQDIGMTLSTMMSDGYVNRINLDGRSYEVIPQVERKLRANPESLANYYVKAADGN 771

Query: 777  LVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDIS 836
             + L ++  I+ VA    L H+N+  S+TI      G  +G A+ FL       LP   +
Sbjct: 772  SIPLSSLVEIEMVAQPRSLPHFNQMNSLTIGGVATPGVAIGDAIAFLKDIGDNQLPKGYN 831

Query: 837  VSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLGL 896
              + GE++ F    S++   F LA+ + +LVLA+QFES  +P+V++++VP+ + G  + L
Sbjct: 832  YDFLGEARQFVTEGSALYSTFLLAIAIIFLVLASQFESLKDPVVILVSVPLAICGALIAL 891

Query: 897  ---FVMG-QGMNIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGVEFEKAIIDASARRL 951
                V G   MNIY+Q+G+I L+G++TK+GIL+ E A + +  RG+   +AI  A+  RL
Sbjct: 892  GWTHVFGLSSMNIYTQVGLITLVGLITKHGILMCEVAKEEQLHRGISRIEAISLAAKIRL 951

Query: 952  RPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGS 1011
            RPILMT    +AG IPL+ ++GAG  +R  +G VI  G+   T+ TL V+P +Y  +   
Sbjct: 952  RPILMTTAAMIAGLIPLLFASGAGAVARFNIGLVIVAGLAIGTVFTLFVLPVIYSFLGEK 1011

Query: 1012 TQ-APGHVEA 1020
             +  P  VEA
Sbjct: 1012 HKPLPEFVEA 1021