Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1034 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  903 bits (2334), Expect = 0.0
 Identities = 478/1039 (46%), Positives = 686/1039 (66%), Gaps = 8/1039 (0%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M L+D+SVKRPV A V+S+LL  FG+V+F KL +RE P I+ PVVS+ T Y+GASA+++E
Sbjct: 1    MILTDLSVKRPVFASVISLLLIAFGLVAFDKLPLREYPHIDPPVVSIETNYRGASASVVE 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
            S+IT ++ED+++G+ GI  I+S S +G S +T+ F +  D+    +DIRD V+    +LP
Sbjct: 61   SRITQLVEDRVSGVEGIRHISSSSSDGRSSVTLEFNINRDIEAAANDIRDRVSSMLNNLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            EEAD P++ K NG  +  +++NL S  M+  +LTDY  R L DRFS + GV+ + + GG 
Sbjct: 121  EEADPPEIRKANGGDEVIMWLNLVSDSMNTLELTDYANRYLADRFSAVDGVAMLRLGGGK 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               + + +  + +A R +  +DI   L  EN+E P G V +     +VR  R ++++EDF
Sbjct: 181  VYALRIWVDRQALAARNLTVADIESKLRSENVELPAGSVESKERHFTVRLERTFRTSEDF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              LV+ +  DG  + L DVA + +G+E E   F+ +    + +G+  QS AN LEVA+ V
Sbjct: 241  ANLVLAQGDDGYLVKLGDVAKIELGSEEERIMFRGNRESMIGLGVTKQSTANTLEVARAV 300

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
            ++ VD++   LP G  +   YDS+VFIE SI EVY+TL I   LVILV+Y+F+G + A L
Sbjct: 301  NKLVDQINPTLPPGMEIKRSYDSSVFIEASIKEVYTTLIIAMLLVILVIYLFLGSVHAML 360

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IPAVTVPVSL+  F+  Y  G++INL+TL+A+IL+IG+VVDDAIV++ENI   IE GE P
Sbjct: 361  IPAVTVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGESP 420

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
            L+A++ G REV FAV+ATTLVLV VF+PI+F++G +G LF EF+V ++ AV+FSSL+AL+
Sbjct: 421  LVASFLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVMFSSLVALS 480

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ SKLL+   +     + +D+    LE  YR  + R IR   A  + + A +G S 
Sbjct: 481  LSPMMCSKLLRPTSESSWLVKKVDKGMDWLEHTYRSSLERTIRHPLAVSLTVIAALGLSV 540

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQ 600
             +MQ VP +  P EDRG +F  V G    SY  +   M+ VE+RLMP++  G +K   I+
Sbjct: 541  WMMQKVPQEFAPREDRGSMFLMVNGPQGASYEYIEKYMNEVEERLMPMVESGEIKRLLIR 600

Query: 601  SP-AFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFM-PGFRGG 658
            +P  FG +A    G  I++LEDW+ R   A + ++ +R  L+ +  V+ FP M  GF  G
Sbjct: 601  APRGFGRSADFSNGMAIIVLEDWSARR-NAFDIMNDIRGKLSDLAGVQAFPIMRQGFGRG 659

Query: 659  SNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAAEL 718
              +PVQFV+GG  Y EL  W + L  +A ++P +   D DY E  P+  V ID+ RAA+L
Sbjct: 660  VGKPVQFVIGGPSYEELAQWRDILMAKAAENPKLLALDHDYKETKPQFRVVIDRDRAADL 719

Query: 719  GISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRT-ATGEL 777
            G+S+  I  TLE MLG + VTTF+  GEEYDV + GD    N A DLS IY+R+  T EL
Sbjct: 720  GVSISHIGRTLESMLGSRLVTTFMRDGEEYDVIIEGDRAKQNTAQDLSNIYVRSDRTREL 779

Query: 778  VTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDISV 837
            + L  +  + E A A  L  YN+ +++TI ANL  GY+LG+ALD+L+   +  LP +  V
Sbjct: 780  IPLSNLVHVQEFADASSLNRYNRMRAITIEANLADGYSLGEALDYLNDTVRTYLPAEAVV 839

Query: 838  SYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLGLF 897
            SY G+S D++E+ +S+  VF LAL V +LVLAAQFES+I+P V+MLTVP+   G  +GL+
Sbjct: 840  SYKGQSLDYQESGNSMYFVFVLALGVVFLVLAAQFESYIHPAVIMLTVPLATLGALIGLW 899

Query: 898  VMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPILMT 957
            + GQ +NIYSQIG+IML+G+  KNGILIVEFANQLRDRGV+F +A++ AS +RLRPILMT
Sbjct: 900  LTGQTINIYSQIGIIMLVGLAAKNGILIVEFANQLRDRGVDFIEALLTASTQRLRPILMT 959

Query: 958  AFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGSTQAPGH 1017
              TT AG++PL+++ GAG E+R  +G V+  G+  AT+ TL+VIP  Y L +  + +P  
Sbjct: 960  GITTAAGAVPLVMAQGAGAETRFVIGVVVLSGIILATIFTLMVIPTAYALFARHSGSPDA 1019

Query: 1018 VEAELNHELQQDVKGRAQH 1036
            V  +L  EL     G+A+H
Sbjct: 1020 VAQKLEAEL----AGKAKH 1034