Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1040 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4

 Score =  547 bits (1409), Expect = e-159
 Identities = 351/1025 (34%), Positives = 551/1025 (53%), Gaps = 26/1025 (2%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S+  + RP  A V+S +L + G++S   L+V E P+I  P VSVST Y GASA I++  
Sbjct: 2    ISEFFIHRPKFAFVISTVLTLVGLISIPILSVAEFPEIAPPQVSVSTSYSGASADIVKDT 61

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            I   +E ++ G+ G+  + S S N G   + VTF++G D +     +++ V +A   LPE
Sbjct: 62   IAQPIEAEVNGVEGMLYMQSKSANDGSYSLNVTFDVGTDADMAQVKVQNRVQQAMPRLPE 121

Query: 122  EADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     V     S    + +NL S     D   +T+Y    + D  +  +GVS V V G 
Sbjct: 122  EVKRQGVKVEKQSPNILMVVNLVSPNETFDSLFITNYAGLNVKDALARQNGVSKVQVIGA 181

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVR------NDSTVMSVRTARG 233
            L   + + + P  MA  GV  SD+  AL ++N++   G++             +++T   
Sbjct: 182  LDYAIRIWLDPNQMASFGVTASDVIAALREQNIQVAAGRIGAAPVDPQQQFQYTLQTKGR 241

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             +  E+F  ++++   DG+ + + DVA V +G++  ++  K +   +  + I    DAN 
Sbjct: 242  LKDPEEFGRVMIRANPDGSKVIVSDVARVELGSQTYDAQGKLNNKPSAIIAIYQAPDANA 301

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            LEVAK +  E+D +    P      + YD+T F+E SI+EV  TLFI+  LV+ V+YIF+
Sbjct: 302  LEVAKAIKAEMDTLASRFPDDLEYKVLYDTTEFVETSITEVVQTLFISVALVVFVVYIFL 361

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               R+TL+P + +PVSLI  F     FG SIN ++L ALIL+IG+VVDDAIVVVEN+   
Sbjct: 362  QDARSTLVPGIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENVTRL 421

Query: 414  IE-RGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            +E  G  P  A  K  +EV   VIATTLVL+ VF P + M G+ G ++ +FSV + ++V+
Sbjct: 422  MEDEGLSPTEATSKAMKEVTGPVIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISVL 481

Query: 473  FSSLIALTLTPVLGSKLLKANVKPGR-FNQLIDRLFARLESGYRQVVSRAIRWRWAAPVV 531
             SS+ ALTL+P L + LLK   K    F+ L +  F R   GY ++VS  +R      V 
Sbjct: 482  ISSVNALTLSPALCASLLKPPKKHTHGFHHLFNTYFERFTGGYMKLVSSLVRKLVLVGVA 541

Query: 532  IAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR---MAANMDLVEQRLMPL 588
             A  IG + G+ +++P+   P ED+      ++  D  S NR   +  N+  + Q    +
Sbjct: 542  YACLIGVTGGIAKVLPSGFVPMEDKKAFMVDIQLPDGASLNRTEEVMRNLVKLTQEEPGV 601

Query: 589  LGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRT---VTAQEALSQVRKALAGIPD 645
                    FSI +    G+     G +I+ L  W +R    +     +++++   A  P 
Sbjct: 602  ENVIHASGFSILT----GSVSSNGGLMIVTLSTWEERDSPDMVEAAIVAKLQAKYAANPS 657

Query: 646  VRVFPF-MPGFRG-GSNEPVQFVLG---GSDYSELKTWAEKLEEEAEKSPFMTGADIDYS 700
            V+   F +P   G GS    +FVL    G    EL +    L  +A   P +  A  ++ 
Sbjct: 658  VKAMAFSLPPIPGVGSVGGFEFVLQDTQGRSPQELASVMRALIMKANGQPEIAMAFSNFR 717

Query: 701  EKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFN 760
               P++ V +D+ +A  LGIS+  I  T++ MLG   V  F   G+ + V L+ +    N
Sbjct: 718  ADVPQMYVDVDRDKAKALGISLNEIFSTMQTMLGSMYVNDFNRFGKVFRVILQAEGEFRN 777

Query: 761  NAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQAL 820
            +  D++  Y+R+A+GE+V L T+ ++  +     +  YN   S TI      G++ G A+
Sbjct: 778  SDKDIASFYVRSASGEMVPLSTLVKVTPILGPDVMNAYNMFSSTTINGFPAPGFSSGDAI 837

Query: 821  DFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLV 880
              +++ AQE LP      ++G++    +  +   ++FALAL+  YL L AQ+ES+  P  
Sbjct: 838  AAMERAAQETLPAGYKFEWTGQTYQEIKAGNLAPLIFALALVFTYLFLVAQYESWSIPFA 897

Query: 881  VMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFE 940
            VML VP+ + G FL + ++G  +N+Y+QIG+++LIG+  KN ILIVEFA QLR+ G    
Sbjct: 898  VMLAVPIAILGAFLNILLVGSELNLYAQIGLVLLIGLACKNAILIVEFAKQLREEGKSIL 957

Query: 941  KAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLV 1000
             A   A+  R R +LMTAF+ L G +PL+++TGAG  SR A+G  +F GM  ATLV  L+
Sbjct: 958  DAAETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMMAATLVGTLL 1017

Query: 1001 IPAMY 1005
            +P  Y
Sbjct: 1018 VPVFY 1022