Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1023 a.a., cation/multidrug efflux pump from Dechlorosoma suillum PS

 Score =  741 bits (1914), Expect = 0.0
 Identities = 405/1014 (39%), Positives = 618/1014 (60%), Gaps = 15/1014 (1%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M LSD+ ++RPV A VLS+ + + G+VS+ +L+VRE P I+ PV++V+T Y+GASA I+E
Sbjct: 1    MLLSDICIRRPVFATVLSLAVMLIGLVSYQRLSVREYPKIDEPVMTVTTTYRGASAEIVE 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
            SQI+  LED LAGI G+D +TS+SR   S+I+V F L  + ++  SD+RD V+R +  LP
Sbjct: 61   SQISKPLEDSLAGIEGVDVLTSISRQESSQISVRFRLERNPDSAASDVRDRVSRVRNRLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            ++ D+P + K        +++  SS +     +TD   RV+  R   + G + V V G  
Sbjct: 121  DDIDEPVIAKVEADASPVIWLAFSSEKHSPLVVTDIANRVVKPRLQTLPGAADVRVFGER 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + +  + +A   +   ++ DAL  +N+E P G++ +     +V      +  E F
Sbjct: 181  KFAMRIWLDKDRLAAHQITAQEVEDALRTQNVEVPAGRIESRQREFAVLAQTDLKEPEQF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              +VVK  + G P+ ++D+  V IGA  E +  +  G   VS+G++ QS ANPL++++ +
Sbjct: 241  AAIVVKTVN-GYPVRIRDLGRVEIGAAAERTNVRFGGKPAVSLGLIKQSTANPLDLSRAL 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
              E+ K+   LP G ++ I YDS+VFI+RSI  V+ST+     LV+L+++ F+  LRATL
Sbjct: 300  RAELPKIAAELPDGLKVEIAYDSSVFIDRSIESVFSTIGEAVILVLLIIFFFLRNLRATL 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP VT+PVSLI AF   +  GF+IN +TL+AL+L+IGLVVDDAIVV+ENI+ HIE G  P
Sbjct: 360  IPLVTIPVSLIGAFALMFVLGFTINTLTLLALVLAIGLVVDDAIVVLENIYRHIEEGMPP 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
            + A+ +G +E+GFAV+A T+ L  V+ P++FM G +G LF EF++ LA AV+ S  +ALT
Sbjct: 420  IQASLQGAKEIGFAVVAMTITLAAVYAPVAFMTGRIGKLFIEFALTLAGAVLVSGFVALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ S LL+   K G+    I+     L +GYR+++  A+  RW   V  AA      
Sbjct: 480  LSPMMCSVLLRHEEKHGKAFVAIENFLNWLNAGYRRILGAALDRRWIVLVGFAAVALACV 539

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRL--MPLLGQGFLKSFS 598
            G+++L+ ++L+P EDRGVIF    G +  +          +E+    +P     F+ S  
Sbjct: 540  GMLKLLKSELSPIEDRGVIFGIFNGPEGATLEYTDKYARQIEKIYAGIPDAANYFVVS-- 597

Query: 599  IQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFMPGFRGG 658
                   GN     G  I+ L+DW +R  ++ E   Q+      IP V  FP  P   G 
Sbjct: 598  -------GNPIVSQGSAILRLKDWKERQHSSPEIAKQLLPRFRDIPGVMAFPVTPPSLGQ 650

Query: 659  S--NEPVQFVLGGS-DYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRA 715
            S    P+ FV+  S  Y EL+    K      KSP     D D     P+L V +++ +A
Sbjct: 651  SARERPINFVIVSSASYQELQATTTKFLAAMAKSPLFLNVDTDLKLNLPQLSVAVNRDKA 710

Query: 716  AELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATG 775
            A+LG+ V+++  TLE MLGG++VT F   GE+YDV ++  +    N  D+S IY+R  +G
Sbjct: 711  ADLGVPVETVGRTLETMLGGRQVTRFKRDGEQYDVIVQVSDADRANPRDISDIYVRGKSG 770

Query: 776  ELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDI 835
            E++ L  + ++DE  S   L H+ ++++VTITANL  G TLG+ L  ++  A E+ P   
Sbjct: 771  EMIPLANLVQVDETISPRELNHFGQRRAVTITANLAPGSTLGEGLAAMEGIAGEVQPAGY 830

Query: 836  SVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLG 895
            +V Y+G+S++FK + +S+A+ F LAL   YLVLAAQFESF +P ++MLTVP+ + G  L 
Sbjct: 831  AVDYNGQSREFKTSTASLALTFILALAFIYLVLAAQFESFRDPFIIMLTVPLSMAGALLA 890

Query: 896  LFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPIL 955
            L + G  +N+YSQIG++ L+G++TK+GILIVEFANQL+++G    +A+I+A+  RLRPIL
Sbjct: 891  LLLSGGTLNVYSQIGLVTLVGLITKHGILIVEFANQLQEQGRNVREAVIEAAELRLRPIL 950

Query: 956  MTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS 1009
            MT    + G+IPL ++ GAG ESR  +G VI  G+   T  TL V+P +Y L++
Sbjct: 951  MTTGAMVLGAIPLALARGAGAESRSQIGWVIVGGLLLGTFFTLFVVPTVYTLMA 1004