Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1078 a.a., transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  520 bits (1338), Expect = e-151
 Identities = 333/1048 (31%), Positives = 550/1048 (52%), Gaps = 42/1048 (4%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S   + RP+ A V+S+++ + G ++   L + + P+I  P V VS  Y GAS  +I + 
Sbjct: 2    ISRFFIHRPIFACVISIVIMLAGFMAMRALPIAQYPEIVPPQVIVSAVYPGASPEVIAAT 61

Query: 63   ITSVLEDQLAGISGIDEITSVSR-NGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            + S LE Q+ G+ G+  + SVS  NG   I+V+F +G D +    ++ + V  A  SLPE
Sbjct: 62   VASPLEQQINGVDGMLYMNSVSAGNGQMTISVSFAVGTDPDQATINVNNRVQAATASLPE 121

Query: 122  EADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     V     S       N+ S +   D   +++Y+   ++D    + GV    + G 
Sbjct: 122  EVRRQGVTVTKRSPSILQVANMFSPDGRYDSVYISNYVLVNVVDELKRLPGVGDASIFGA 181

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVR-----TARG- 233
                M + + P+ +A   +   D++ A+ ++N +   G++  + +   +      T +G 
Sbjct: 182  KDYSMRIWLHPDKLAQLKLTPGDVALAIREQNAQFAAGRIGQEPSSSPLELNYLVTTKGR 241

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
              + E+FE ++++   DG+ + LK VA V +GA++ +   + +G   V++G+     AN 
Sbjct: 242  LTNPEEFENIILRAEPDGSTLLLKHVARVELGAKDYDVRTQLNGKPTVAVGVFLTPGANA 301

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            LE A RV  ++ ++ Q  P G   +I YD+T F+  SI+EV  TL     LV LV+++F+
Sbjct: 302  LETADRVAAKMQELSQRFPDGISYSIPYDTTKFVRISITEVVHTLVEAMVLVFLVVFLFL 361

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RATLIP + VPVS++  F   Y  GFSIN +TL  L+L+IG+VVDDAIVV+EN+   
Sbjct: 362  QNWRATLIPCLAVPVSIVGTFAGMYALGFSINTLTLFGLVLAIGIVVDDAIVVLENV-ER 420

Query: 414  IERGEK--PLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAV 471
            I   E+  P  A  K   EV   VIA  LVL  VF+P++FM G+ G ++ +F++ +A++V
Sbjct: 421  IMSSERLTPRKATIKAMEEVTGPVIAIVLVLCSVFVPVAFMGGLAGQMYKQFAITIAVSV 480

Query: 472  IFSSLIALTLTPVLGSKLLK-ANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPV 530
            + S L+ALTLTP L + +LK  + +P  F +  +  F R+   Y   V+  IR R    +
Sbjct: 481  VISGLVALTLTPALCALMLKPGHHEPPAFFRWFNNWFERVTHRYTGGVAFLIR-RAGLAL 539

Query: 531  VIAACIGGS-YGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQ------ 583
            V+ AC+GG+ + L Q+VP  L P ED+G I       D  S  R     DL+++      
Sbjct: 540  VLFACLGGATWHLFQVVPGGLAPDEDQGYIIGLSILPDGASLQRTRVVADLMDKSHMEDP 599

Query: 584  ---RLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKAL 640
                L+ L G   L    +  P F       T FV   L+ W++R    Q +    RK  
Sbjct: 600  RVANLITLTGYDLLSG--VPKPNF------VTSFVP--LKPWDERKGAGQSSFDYARKVF 649

Query: 641  A---GIPDVRVFPFMPGFRGGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSPFM 692
                G+P+  V  F P    G +    F L     G  D   L     K    A K P +
Sbjct: 650  GVGMGVPEGIVLAFNPPPISGMSNTGGFELYVQNRGEGDSKALAGMVGKFIAAAAKRPEL 709

Query: 693  TGADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYL 752
             G    +S   P+L +++D+ +A  LG+ V +I DT++   G   V  F + G  + V +
Sbjct: 710  AGVQTTFSANAPQLFISLDRNKAKALGVPVNTIFDTMQATFGASYVNDFNKFGRTFKVQM 769

Query: 753  RGDENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEA 812
            + + +     AD++ +++R  +GE++ L ++  + EV     +  +N   +  +      
Sbjct: 770  QSEADFRARPADVANVFVRATSGEMIPLTSLVDVQEVTGPEVVERFNVFPAAKVVGGPAP 829

Query: 813  GYTLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQF 872
            GY+ GQA+  +++ A E++P + ++++SG +   K+   S ++VF L L++ +L+LAAQ+
Sbjct: 830  GYSSGQAIAAIEEVAAEVMPPEYTLAWSGSAYQEKQTGGSSSLVFVLGLVMVFLILAAQY 889

Query: 873  ESFINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL 932
            E +  PL V++ VP  +FG    +++ G   ++Y QI ++ LIG+  KN ILIVEFA   
Sbjct: 890  EKWSLPLAVIMAVPFALFGAITAVWLRGLANDVYLQISLVTLIGLAAKNAILIVEFAVIK 949

Query: 933  RDRGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGF 992
            R  G+   ++ I+A+  R RPI+MT+   + G +PL +S+GAG  SR ++GT +  GM  
Sbjct: 950  RHEGLSLVESAIEAARLRFRPIIMTSLAFVLGCVPLAISSGAGAASRHSIGTGVIGGMLA 1009

Query: 993  ATLVTLLVIPAMYRLISGSTQAPGHVEA 1020
            AT +    IP  YRLI G ++     EA
Sbjct: 1010 ATFIATFFIPMFYRLIMGVSERMRGTEA 1037