Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1544 bits (3998), Expect = 0.0
 Identities = 783/1022 (76%), Positives = 900/1022 (88%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            MWLSDVSVKRPV A+VLS+LLCVFG+VSFTKL+VREMPD+ESPVV+VST Y GASA I+E
Sbjct: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
            SQIT  LED+L GISGIDEITS +RNG SRITV F LG++L  GVSD+RDAVARAQR LP
Sbjct: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            E+A+DP V K+NGSG+ SVY+NLSSS MDRTQLTDY +RVL DRFSLISGVSS+ +SGGL
Sbjct: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
            YKVMYV+++PE MAGR V  +DI+ AL KEN+E+PGGQVRND+TVMSVRT R Y + +DF
Sbjct: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
            +YLVV+ ASDGTPIYLKDVADV +GA+NENSTFKSDGIVN+S+G++ QSDANPL VA+ V
Sbjct: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
            H+EVDK+Q FLP+GT L +D+DSTVFI+RSI+EVY+TL++TG LV+LVLYIFIGQ+RATL
Sbjct: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IPAVTVPVSLISAF+AA  FG+SINL+TLMALIL+IGLVVDDAIVVVENIFHHIE+GE+P
Sbjct: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
            LLAAYKGTREVGFAV+ATT VLVMVFLPISFM+GMVGLLFTEFSV+LA++V+FSSLIALT
Sbjct: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            LTPVL SKLLKANVKP RFN+ +DR FAR+E  Y   V+ AIR+R  AP+VI ACIGGS 
Sbjct: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGSV 540

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQ 600
             LMQ VPAQL P EDRGV+++FV+GA+ TSYNRM ANMD+VE RLMPLLGQG L+SFS+Q
Sbjct: 541  WLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFSVQ 600

Query: 601  SPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFMPGFRGGSN 660
            +PAFGG AGDQTG+VIM LEDW  R VTAQ+AL  + KAL  IPDV V P MPGFRG S+
Sbjct: 601  APAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMVRPMMPGFRGQSS 660

Query: 661  EPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAAELGI 720
            EPVQFVLGGSDY+EL  WA+ L+E+A  SP M GAD+DY+E TPEL+VT+DK+RAAELGI
Sbjct: 661  EPVQFVLGGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDKERAAELGI 720

Query: 721  SVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATGELVTL 780
            SV  +S TLEVMLGG+K TT+V+RGEEYDVYLRGDENSFNN  DLSQIYMR+A GELVTL
Sbjct: 721  SVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRSAKGELVTL 780

Query: 781  DTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDISVSYS 840
            DTVT I+EVASA RL+H NKQKS+T+ AN+  GYTLG+AL FL+ K+ E+LP DIS+ Y+
Sbjct: 781  DTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELLPKDISIGYT 840

Query: 841  GESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLGLFVMG 900
            GESKDFKENQSS+ IVF LALLVAYLVLAAQFESFINPLVVM TVPMGVFGGFLGL V  
Sbjct: 841  GESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLGLLVTS 900

Query: 901  QGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPILMTAFT 960
            QG+NIYSQIGMIMLIGMVTKNGILIVEFANQLRDRG+  +KAIIDAS RRLRPILMTAFT
Sbjct: 901  QGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDKAIIDASTRRLRPILMTAFT 960

Query: 961  TLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGSTQAPGHVEA 1020
            TL G+IPLI STGAG ESRIAVGTV+FFGM FAT VTL VIPAMYRLIS +T +PG+VEA
Sbjct: 961  TLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLISAATHSPGYVEA 1020

Query: 1021 EL 1022
            +L
Sbjct: 1021 KL 1022