Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1031 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  910 bits (2351), Expect = 0.0
 Identities = 474/1032 (45%), Positives = 684/1032 (66%), Gaps = 4/1032 (0%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M L+D+SVKRPV A V+S+LL  FG+V+F KL +RE P+I+ P+VS+ T Y+GASA ++E
Sbjct: 1    MILTDLSVKRPVFASVISLLLVAFGLVAFGKLPLREYPNIDPPIVSIETNYRGASAAVVE 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
            S+IT ++ED+++G+ GI  ++S S +G S++T+ F++  ++    +D+RD ++    +LP
Sbjct: 61   SRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISGLLDNLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            EEAD P+V K NG  +  +++NL S +M   +LTDY  R L DR S++ GVS + + GG 
Sbjct: 121  EEADPPEVQKANGGDEVIMWLNLESDQMTTLELTDYTRRYLADRLSVVDGVSMIRIGGGK 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M V +  + +A R +  +D+  AL  EN+E P G + +     +VR  R Y+SAEDF
Sbjct: 181  VYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLERSYRSAEDF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              LV+ +  DG  + L DVA V +G++ +   F+ +    + +G+  QS AN LEVA+ V
Sbjct: 241  ANLVIVQGEDGYLVKLGDVARVEVGSDEDRIMFRGNRESMIGLGVSKQSTANTLEVARGV 300

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
            +  VDK+   LP G  +   YDS+VFIE SI EVY TLF    LVI+V+Y+F+G +RA L
Sbjct: 301  NALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLGSVRAML 360

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IPA+TVPVSL+  F+  Y  G++INL+TL+A+IL+IG+VVDDAIV++ENI   IE G+ P
Sbjct: 361  IPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGDSP 420

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
            L AA+ G REV FAVIATTLVLV VF+PI+F++G +G LF EF+V ++ AVIFSS++ALT
Sbjct: 421  LKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVIFSSIVALT 480

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ +KLLK   +     + +D +   +   Y+  +  A+       V++   +G S 
Sbjct: 481  LSPMMCAKLLKPAEQDSWLVRKVDSIMTGISRRYQSSLEGAMTKPVLMLVIVLIALGSSV 540

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQ 600
             L Q VP +  P EDRG +F  V G    SY  + + M  VE RLMPL+  G +K   I+
Sbjct: 541  FLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEYIESYMTEVESRLMPLVDSGDIKRLLIR 600

Query: 601  SPAFGGNAGD-QTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFM-PGFRGG 658
            +P   G A D   G  I++LEDW  R    +E +  + K LA +  V+ FP M   F  G
Sbjct: 601  APRGFGRAADFSNGMAIIVLEDWGQRR-PMKEVIGDINKRLADLAGVQAFPVMRQAFGRG 659

Query: 659  SNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAAEL 718
              +PVQFV+GG  Y EL  W + + ++  ++P + G D DY E  P+L V ID+ RAA L
Sbjct: 660  VGKPVQFVIGGPSYEELAAWRDIMMQKVAENPKLLGLDHDYKETKPQLRVVIDRDRAASL 719

Query: 719  GISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRT-ATGEL 777
            G+S+ +I  TLE MLG + VTTF+  GEEYDV + G+ ++ N AADL  IY+R+  T EL
Sbjct: 720  GVSISNIGRTLESMLGSRLVTTFMRDGEEYDVIVEGERSNQNTAADLQNIYVRSERTKEL 779

Query: 778  VTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDISV 837
            + L  +  ++E A A  L  YN+ +++TI A+L  GY+LG+ALD+L+Q A+  LP +  +
Sbjct: 780  IPLSNLVTVEEFADASSLNRYNRMRAITIEASLADGYSLGEALDYLNQVARANLPAEAVI 839

Query: 838  SYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLGLF 897
            SY G+S D++E+ SS+  VF LAL + +LVLAAQFES+I+P+V+MLTVP+   G  LGL+
Sbjct: 840  SYKGQSLDYQESGSSMYFVFLLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALLGLW 899

Query: 898  VMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPILMT 957
              GQ +NIYSQIG+IML+G+  KNGILIVEFANQLRD+GV+F++AII AS +RLRPILMT
Sbjct: 900  FTGQSLNIYSQIGIIMLVGLAAKNGILIVEFANQLRDKGVDFDRAIIQASCQRLRPILMT 959

Query: 958  AFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGSTQAPGH 1017
              TT AG++PL+++TGAG E+R  +G V+  G+  ATL T+ VIP  Y L + ++ +P  
Sbjct: 960  GITTAAGAVPLVLATGAGAETRFVIGVVVLAGIMLATLFTIYVIPTAYGLFARNSGSPEA 1019

Query: 1018 VEAELNHELQQD 1029
            +  +L  EL QD
Sbjct: 1020 IAQQLEKELAQD 1031