Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., aminoglycoside/multidrug transporter subunit AcrD from Klebsiella michiganensis M5al

 Score =  491 bits (1265), Expect = e-143
 Identities = 308/1033 (29%), Positives = 534/1033 (51%), Gaps = 34/1033 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +++  + RP+ A VL++LLC+ G+++   L V + P++  P V ++  Y GASA  +E+ 
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGILAILSLPVEQYPELAPPNVRITANYPGASAQTLENT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +T V+E  + G+  +  ++S S   G + +T++F  G D +  V  +++ +  A R LP+
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFTAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 122  EADDPQVF--KNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
               +  V   K   +   ++    +   MD+  + DY+   + D  S ++GV  +D  G 
Sbjct: 121  AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTV------MSVRTARG 233
             Y  M + + P  +    +   D++DA++ +N +   GQ+    +V       ++ +   
Sbjct: 181  QYS-MRIWLDPAKLNSFQMTAKDVTDAISSQNAQIAVGQLGGTPSVDKQALNATINSQSL 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             Q+ E F  + ++   DG+ + L DVA V +GAE  +   + +      +G+   S AN 
Sbjct: 240  LQTPEQFRDITLRVNQDGSEVTLGDVATVEMGAEKYDYLSRYNRQAASGLGVKLASGANE 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            +  A+RV + ++++ Q+ P G    + Y++T F++ SI++V  TL     LV LV+Y+F+
Sbjct: 300  MATAERVIDRLNELSQYFPHGLEYKVAYETTSFVKASITDVVKTLLEAIALVFLVMYLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RATLIP + VPV L+  F   Y  G+SIN +T+ A++L+IGL+VDDAIVVVEN+   
Sbjct: 360  QNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTMFAVVLAIGLLVDDAIVVVENVERI 419

Query: 414  I-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            + E G  P  A  K   ++  A++   +VL  VF+P++F  G  G ++ +FS+ +  A++
Sbjct: 420  MSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMV 479

Query: 473  FSSLIALTLTPVLGSKLLKANVKP---------GRFNQLIDRLFARLESGYRQVVSRAIR 523
             S L+A+ LTP L + LLK   K          G FN+  +R  +R E+   +++ R++R
Sbjct: 480  LSVLVAMILTPALCATLLKPVHKGETHGQRGFFGWFNRTFNRNASRYETAVGKILHRSLR 539

Query: 524  WRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQ 583
            W     ++    +GG   L   +P    P EDRG+  + V+    ++  +    +   E 
Sbjct: 540  WI----MIYVLLLGGMVFLFLHLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVQQAED 595

Query: 584  RLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEA---LSQVRKAL 640
              +    Q     F+      GGN G     + + L+DW+ R  T   +   + +  KA 
Sbjct: 596  YFLNNEKQNVESVFATIGSGPGGN-GQNVARMFVRLKDWDQRDPTTGSSFAIIERATKAF 654

Query: 641  AGIPDVRVFPFMPGFRGGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSPFMTGA 695
              I + RVF   P    G      F +      G+ +  L    + L E A K+  +T  
Sbjct: 655  NKIKEARVFASSPPAISGLGSSAGFDMELEDHAGNGHEALMAARDTLLELAAKNNQLTRV 714

Query: 696  DIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGD 755
              +  + +P+L V ID+++A  LG+S+  I+DTL+   G   V  F++RG    VY++  
Sbjct: 715  RHNGLDDSPQLQVDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAA 774

Query: 756  ENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYT 815
                    D++  Y+R ++G +V             + RL  YN   +V I      G +
Sbjct: 775  APYRMLPDDINLWYVRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVS 834

Query: 816  LGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESF 875
             G A+  +++ AQ+ LPN   + ++  S   + + +    ++A++LLV +L LAA +ES+
Sbjct: 835  TGTAMTLMEELAQQ-LPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESW 893

Query: 876  INPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR 935
              P  VML VP+GV G  L  ++ G   ++Y Q+G++ +IG+  KN ILIVEFAN+L  +
Sbjct: 894  SVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANELNQK 953

Query: 936  GVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATL 995
            G +   A + A  +RLRPILMT+   + G +P+  STGAG  S+ AVGT +  GM  AT+
Sbjct: 954  GEDLLTATLSACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATV 1013

Query: 996  VTLLVIPAMYRLI 1008
            + +  +P  + L+
Sbjct: 1014 LAIFFVPLFFVLV 1026