Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  179 bits (454), Expect = 1e-49
 Identities = 108/336 (32%), Positives = 181/336 (53%), Gaps = 19/336 (5%)

Query: 20  VLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQ 79
           + S  EP  P +++V T + Q  Q    L  VG LKA Q VD++ E+AG V  +  Q+ Q
Sbjct: 32  IQSFSEPKPPISVAVATAAQQPWQAR--LPTVGSLKALQGVDLSLEIAGTVQKVQFQSGQ 89

Query: 80  QVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEI 139
           +VK GQ L++LD +   A L  A+A L   Q       +L+   AI+  E D   A+++ 
Sbjct: 90  KVKVGQPLLQLDSEVESALLETAEADLGLSQVDFGRGRQLVGSQAISKGEFDRLSAQLKK 149

Query: 140 GQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPER 199
            QA +N  +A+LA  HI APF GT+G      G ++++G+ + TL +LS + +D  +PE+
Sbjct: 150 NQATVNQLKASLAKKHILAPFSGTIGIRQVDVGDYLASGTVIATLQDLSSLYVDFYVPEQ 209

Query: 200 YLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLM 259
            +P+L+    V  S  A+P   F G++ A++ ++   T N+ VR    NPD +L PGM  
Sbjct: 210 SVPRLAVAQSVNVSVSAYPGQTFVGTISAINPKVEDSTRNVLVRATLANPDGKLLPGMFA 269

Query: 260 SARIHFPAISAPI-IPVQALEYSGTKRFVYVIGEDN----------------VAKRREVS 302
           + ++  P ++A I +P  A+ Y+     +YV+ +                  +A+RR V 
Sbjct: 270 NLQVILPDVAAGIVVPESAVTYTLYGNSMYVVTQKKAADGTVEKDDKGQPVLIAERRFVE 329

Query: 303 LGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVS 338
            G R + QV++ KG+Q GE++V+ G + + +   ++
Sbjct: 330 TGERRDGQVLVSKGVQSGEQVVIAGQIKLDNGTPIA 365