Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N1B4

 Score =  158 bits (400), Expect = 2e-43
 Identities = 99/326 (30%), Positives = 164/326 (50%), Gaps = 17/326 (5%)

Query: 30  PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIK 89
           P ISV   +   +     L  VG L A Q VD++ E+AG V  +  ++ Q+VK GQ +++
Sbjct: 40  PPISVAVATATERPWQSRLPTVGTLTALQGVDLSLEIAGTVKEVQFESGQKVKAGQPILQ 99

Query: 90  LDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQA 149
           LD     A L  A+A L   Q       +L+   AI+  E D   A ++  +A +N  +A
Sbjct: 100 LDTAVETALLATAQADLGLAQLDYGRGSQLVGSQAISKGEFDRLSAVLQKSRATVNQLKA 159

Query: 150 NLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMK 209
            L    I APF GT+G      G +V++G+ + TL ++S + +D  +PE+ +P+++ G  
Sbjct: 160 ALERKRILAPFSGTIGIRQVDVGDYVASGTMIATLQDISSLYVDFFVPEQSVPKIALGQP 219

Query: 210 VQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAIS 269
           VQ    A+P   F G++ A++ ++   T N+ VR    NPD +L PGM  S ++  P   
Sbjct: 220 VQVIVSAYPTESFPGTISAINPKVESSTRNVLVRATLANPDDKLLPGMFASLQVMLPDPQ 279

Query: 270 API-IPVQALEYSGTKRFVYVIGEDN----------------VAKRREVSLGARVENQVV 312
             I +P  A+ Y+     +YV+ +                  +A+RR +  G R +  V+
Sbjct: 280 PRIVVPESAITYTLYGNSLYVVAQKKAEDGSLEKDDKGEPILIAERRFIETGERRDGMVM 339

Query: 313 IEKGLQIGEKIVVQGIVNMRDNARVS 338
           I KG+Q GEK+V  G + +   A ++
Sbjct: 340 ITKGVQNGEKVVTGGQIKLDHGAHIA 365