Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  124 bits (311), Expect = 4e-33
 Identities = 112/363 (30%), Positives = 177/363 (48%), Gaps = 31/363 (8%)

Query: 9   LTLLTLLMNSAVLSAKEPNQ----PPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAA 64
           L  LT+L+ +A   A E  Q    PPA+SV    V  QQ+++   + G+L+A +SV+I  
Sbjct: 12  LIALTVLITAACGKAPEATQSGMPPPAVSVA--EVIEQQVTEWDELTGRLEAPESVEIRP 69

Query: 65  EVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQD----EQRKLTEY---E 117
            V+G +D  A +    VKKG +L ++D    QA +   +A LQ     +QR + E    E
Sbjct: 70  RVSGFIDKAAFEEGALVKKGDLLFQIDPRPFQAEVKRLQAQLQQARAIQQRTVAEAERGE 129

Query: 118 RLLKRNAITPTEIDAQ-------RARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFS 170
           RL ++NAI+    DA+       R+     QA+L+ AQ +L+   +TAP DG VG    +
Sbjct: 130 RLRQKNAISAELADARVSAASEARSATAAIQAQLDRAQLDLSFTRVTAPIDGRVGRALIT 189

Query: 171 RGKWVSAGSELL-TLDNLSLMRLDLQIPER-YLP--QLSKGMKVQGSSEAWPNVQFE--- 223
            G  V+A   LL TL +   +    +  ER YL   +L++      ++  +  +  E   
Sbjct: 190 SGNLVNASEALLTTLVSTDKVYAYFEADERTYLKYRELARNGDRGETTPVYLGLSSEDGH 249

Query: 224 ---GSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPA-ISAPIIPVQALE 279
              G +  VD++++  T  +R R  F N D    PG+    ++   A   A +I   A+ 
Sbjct: 250 PHLGHMDFVDNQVDPRTGTIRGRAVFDNRDGSFTPGLYARLKLVGSATYDAVLIKDVAVG 309

Query: 280 YSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSE 339
               K+FV V+ ED     R V LG ++E   ++  GL  GE IVV G+  +R  + V  
Sbjct: 310 TDLGKKFVLVLAEDGTVAYRPVELGPKLEGLRIVRSGLAKGESIVVNGLQRVRPGSPVQP 369

Query: 340 VTV 342
            +V
Sbjct: 370 ESV 372