Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  175 bits (444), Expect = 2e-48
 Identities = 112/359 (31%), Positives = 186/359 (51%), Gaps = 16/359 (4%)

Query: 6   VLSLTLLTLLMNSAVLSAKEPNQP-PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAA 64
           V+   L  L  NS     ++   P PAI V TE  +       L  +G L+A Q +D++ 
Sbjct: 14  VVVAILAALKFNSIYQQIQQFQAPKPAIDVETELARRMDWQSRLPAIGTLRASQGIDLSV 73

Query: 65  EVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNA 124
           E+AG +  +  Q+ ++V KGQ ++ LD +  +A+L  A+A L   + +      LL R A
Sbjct: 74  EIAGTITDVQFQSGEKVSKGQPIVLLDSEMERASLASAEADLNLSRVEFQRARSLLDRQA 133

Query: 125 ITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTL 184
           I+ +E D   A  +  +A +   +A+LA   I APF GT+G      G +++AG+ + TL
Sbjct: 134 ISRSEYDRLNAESQKAEASVAQLRASLAKKRILAPFAGTIGIRQVDVGDYIAAGTPIATL 193

Query: 185 DNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRV 244
            +LS + +D  + E+++P L+ G KVQ    A+P+ +FEG + A++ ++   T N++VR 
Sbjct: 194 QDLSTLYVDFFLAEQHVPLLALGQKVQLRVAAYPDQRFEGVITALNPKVETTTRNVQVRA 253

Query: 245 HFPNPDQRLKPGMLMSARIHFPAISAP-IIPVQALEYSGTKRFVYVIGEDN--------- 294
              NPD RL PGM    ++  P  +A  ++P  A+ Y+     V ++ E           
Sbjct: 254 ELANPDGRLLPGMFADLQVLLPTETAQVVVPETAITYTLYGNSVLLVTEGTPPEGVTTDE 313

Query: 295 ---VAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVEGRPLKKD 350
              V +RR V+ G R +   VI +GL+ GE+++  G + +   A V+    E R LK D
Sbjct: 314 PYLVVERRFVTTGERRDGVTVILEGLEGGEQVITAGQLKLDSGAHVA--IAENRTLKLD 370