Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  127 bits (319), Expect = 5e-34
 Identities = 96/366 (26%), Positives = 166/366 (45%), Gaps = 36/366 (9%)

Query: 6   VLSLTLLTLLMNSAVLSAKEPNQPPA--------ISVVTESVQSQQISQSLSVVGKLKAE 57
           VL +  + + M       K P  P          + V      +Q +    + +G + A 
Sbjct: 14  VLVVVFVAMRMMGGGQQGKRPGAPDGNGTENSGPVPVTVVPAATQDVPVYATALGTVTAL 73

Query: 58  QSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLT--- 114
            +V +  +V+G++  +  Q  Q+VKKG +L ++D    QA+  +A A  +  Q  L    
Sbjct: 74  NTVTVNPQVSGQLMSLNFQEGQEVKKGALLAQIDPRTLQASYDQALAAKRQNQALLATAR 133

Query: 115 -EYERL---LKRNAITPTEIDAQR-------ARVEIGQARLNAAQANLADLHITAPFDGT 163
             Y+R      +  ++ T++D QR       A V    A++ +AQ  L    +TAP DG 
Sbjct: 134 VNYQRSNDPAYKQYVSRTDLDTQRNQVAQYEAAVAANDAQMRSAQVQLQFTRVTAPIDGI 193

Query: 164 VGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKV---------QGSS 214
            G      G  VS  S ++TL  +  + +   +PER LP +  G            +G +
Sbjct: 194 AGIRGVDVGNIVSTTSTIVTLTQIRPIYVSFSLPERELPAVRSGQAATPLPVAALDRGDA 253

Query: 215 EAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAIS-APII 273
                +  +G +  +D+RI  ++     R  F N D  L PG  ++ R+    IS   ++
Sbjct: 254 HV---ISADGKLDVIDNRIAADSGTFGARAIFGNADNALWPGQFVNVRLQLRTISGGTVV 310

Query: 274 PVQALEYSGTKRFVYVIGEDNVAKRREVSLGARV-ENQVVIEKGLQIGEKIVVQGIVNMR 332
           P QA++      +VYV+G D+ A+ R V  G  V ++ V I KGL+ GE++V +G   ++
Sbjct: 311 PTQAVQRGPDGDYVYVVGSDSTAQMRTVVQGVEVDDSHVQITKGLKPGERVVTEGQFRLK 370

Query: 333 DNARVS 338
             ++VS
Sbjct: 371 PGSKVS 376