Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., HlyD family-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  191 bits (484), Expect = 3e-53
 Identities = 106/314 (33%), Positives = 170/314 (54%), Gaps = 1/314 (0%)

Query: 26  PNQP-PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKG 84
           P +P P  +VV   V +Q++   +  +G   A +SV I A+V      +       V+ G
Sbjct: 29  PARPRPVPNVVVTKVATQEVRDEVEALGTTHANESVTITAKVTDVATKVNFSDGDIVRAG 88

Query: 85  QILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARL 144
           Q+L++L D + +A +  AK  + D QR+      L+    +   E D  +  ++  +A L
Sbjct: 89  QLLVQLQDAEQRARVQVAKVKVIDNQREFDRIRSLVTSQTVAELERDRLQTLIDTSRAEL 148

Query: 145 NAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQL 204
             A++ L D  ITAPF G +G    S G  V+ G+ + TLD++S ++LD  +PER+LPQL
Sbjct: 149 EQAESALRDRAITAPFAGRLGLRQVSPGALVTPGTAVTTLDDISTIKLDFAVPERFLPQL 208

Query: 205 SKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIH 264
             G  V+  + A+    F G V ++DSR+N  T  + VR   PNPD +L PGMLM  R+ 
Sbjct: 209 HPGKAVEAQAVAYEGQLFTGKVTSIDSRVNPSTRAVTVRAEIPNPDAKLLPGMLMKIRLI 268

Query: 265 FPAISAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIV 324
             +  A ++P  A+     + +VY++G DN   RREV++G R      I  GL +GE I+
Sbjct: 269 KTSREAIMVPESAIIPLQNRHYVYMVGADNKVDRREVTIGLRKRGWAEIVDGLALGETIM 328

Query: 325 VQGIVNMRDNARVS 338
           ++GI+ +R   +V+
Sbjct: 329 IRGILKVRPGDQVT 342