Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  161 bits (407), Expect = 3e-44
 Identities = 99/319 (31%), Positives = 171/319 (53%), Gaps = 7/319 (2%)

Query: 27  NQP-PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQ 85
           NQP P I+V  E  +++    ++  VG L+A   V + A VAG V+ I+ ++ Q+VKKG 
Sbjct: 37  NQPEPVITVTVEDARAEDWQDTIPAVGTLRAINGVTVGAAVAGIVETISFESGQRVKKGD 96

Query: 86  ILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLN 145
           +L++LDD + +  L   +A  +  +       RL++  A T   +D   A++ +  A + 
Sbjct: 97  LLVRLDDGEERGELDAVRAQAELSRITAGRARRLVQSAAGTRANLDDAEAQLRVNLATIG 156

Query: 146 AAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLS 205
             +A +A   +TAPFDG +G      G++V+AG  L+ L +LS++  D  + ++ L +++
Sbjct: 157 QLEARVAKKTVTAPFDGVLGVRAVDLGEYVTAGQTLVDLQDLSVILADFSVSQKDLGRVA 216

Query: 206 KGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMS-ARIH 264
            G K+  +++AWP   FEG++ A+  +++  T    V   F NPD  L+PGM    A + 
Sbjct: 217 VGAKLTLTTDAWPGRAFEGTIKAIAPKVDANTGMAVVEGRFDNPDGALRPGMFAKLAVLR 276

Query: 265 FPAISAPIIPVQALEYSGTKRFVYVI---GEDNVAK--RREVSLGARVENQVVIEKGLQI 319
               S   +P  A+ YS     +YV+   GED   +  R  V+ G R  ++VV+  GL  
Sbjct: 277 AERQSVVTVPATAVTYSLHGDALYVLKEAGEDGKVRVDRITVTTGVRRGDRVVVTAGLSA 336

Query: 320 GEKIVVQGIVNMRDNARVS 338
           G+++V  G V + D + V+
Sbjct: 337 GQRVVTSGQVKLNDGSAVA 355