Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  162 bits (410), Expect = 1e-44
 Identities = 95/314 (30%), Positives = 164/314 (52%), Gaps = 1/314 (0%)

Query: 31  AISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKL 90
           A+ V   +V+  +++  +  VG  +A Q++ +    +G++  +     ++V KG +L++L
Sbjct: 42  ALPVEVAAVRRARVADRVEAVGTTRAHQAIAVVPLASGRIVEMPFPPGRKVNKGDVLVRL 101

Query: 91  DDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQAN 150
           DD   +A + EA+A L    R L     L +  A+    +D  ++      ARL+ A  +
Sbjct: 102 DDAAQRADVEEAEATLTQVSRALERARSLRRTQAVAQATVDDLQSNRAAAAARLDRAHKD 161

Query: 151 LADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKV 210
           LAD  I APF G VGF +   G  VS G  L TLD+LS + ++  +PE +  +L  GM +
Sbjct: 162 LADRVIAAPFAGIVGFRELDVGARVSEGERLTTLDDLSSVDVEFAVPEIHFGRLRPGMAI 221

Query: 211 QGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISA 270
           + +S+A+P   F G++  +DSRI + +   RVR   PNP   L  G+ ++  I      A
Sbjct: 222 EATSQAFPGRIFTGAIDRIDSRIGEVSRAFRVRATLPNPQGLLPSGLFLNVSIVIEERPA 281

Query: 271 PIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVN 330
            ++P +A++       VYVI +    +R+ + LG R    V +  GL  G+++V +GI  
Sbjct: 282 LMVPEEAIQAEAGGSVVYVI-QGGAVRRQPIVLGQRTGTAVEVRDGLAEGDQVVSRGIQR 340

Query: 331 MRDNARVSEVTVEG 344
           +RD + V+ +   G
Sbjct: 341 LRDGSPVTVIGSAG 354