Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  155 bits (393), Expect = 1e-42
 Identities = 95/332 (28%), Positives = 177/332 (53%), Gaps = 9/332 (2%)

Query: 27  NQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQI 86
           N+PP I+V     +++ +   L+ VG L A   V++ ++V+G++  I  QA  +VK+G +
Sbjct: 61  NKPPPITVTVAEAKTEVLPNLLTAVGDLAAVHQVNVTSDVSGRITDILFQAGSEVKQGTL 120

Query: 87  LIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNA 146
           L+KL D+  QA L   +A  +  +  L   ++L  R       +D+ +A  +   A +  
Sbjct: 121 LVKLFDETEQADLANYRAQAKVAELSLDRAKQLAARQFGPQATVDSAQAAYDQANAGIAK 180

Query: 147 AQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSK 206
            +A ++   + APFDG +G      G+++SAG++++TL +LS +  ++ + E+    L+ 
Sbjct: 181 TEALISQKKVRAPFDGVLGVRHVEVGQYLSAGTQIVTLTDLSQVYANITVTEKDSGTLAV 240

Query: 207 GMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFP 266
           G  V+   +A+P   F+G +  ++ +I+ +T N+RV+    NP   L+PGM  +  +  P
Sbjct: 241 GQAVRLKVDAYPGRVFDGKITTIEPQISSDTRNIRVQATLDNPGHVLRPGMFATTIVVLP 300

Query: 267 AISAPI-IPVQALEYSGTKRFVYVI----GEDNVAK----RREVSLGARVENQVVIEKGL 317
              A + +P  A++Y+     V++I    GED  AK    R  V  G R++ + VI+ GL
Sbjct: 301 DKPAVVTVPETAVDYTLYGDSVFLIKEEKGEDGKAKLSAVRTFVRTGDRIDGRTVIQTGL 360

Query: 318 QIGEKIVVQGIVNMRDNARVSEVTVEGRPLKK 349
           + G+++V  G + ++  A V+  T    P  K
Sbjct: 361 KAGDRVVAVGQLKLQSGAAVAISTDPPPPQPK 392