Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., efflux transporter periplasmic adaptor subunit from Pedobacter sp. GW460-11-11-14-LB5

 Score =  129 bits (325), Expect = 9e-35
 Identities = 86/342 (25%), Positives = 169/342 (49%), Gaps = 7/342 (2%)

Query: 3   KNTVLSLTLLTLLMNSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDI 62
           K  V+ L L TLL  +   S KE  +  A   VT  ++    S +   V ++K+ +++++
Sbjct: 2   KRVVMCLGLCTLLYVTGCTSKKEEKEEVATYAVTTPLK-MDTSFTKEYVSQIKSVRNIEV 60

Query: 63  AAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKR 122
            A+  G +  I V   Q VK GQ+L K+    AQ+ L++A+A  +  + +L   + L  +
Sbjct: 61  RAQEKGYLQNIYVDEGQHVKAGQLLFKIMPKAAQSELLKAQAETKSAEIELENTKLLSDK 120

Query: 123 NAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELL 182
           N ++  E+   +A+++   A  + A+ +L++  I APF+GT+  I    G  V  G+ L 
Sbjct: 121 NIVSKNELAMAKAKLQSANAETSLAKFHLSNTEIRAPFEGTIDRIPLKLGSLVDEGALLT 180

Query: 183 TLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAW------PNVQFEGSVVAVDSRINQE 236
           +L + S +     + E          K +G  E          ++ +G V  ++S  + E
Sbjct: 181 SLSDNSQVFAYFNVSEPEYLNYQSTAKAKGQQEVSLLLANNELLKSKGKVEVIESEFDNE 240

Query: 237 TLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGEDNVA 296
           T N+  R  F N D  L+ G     ++  P  +A +IP +A      K +V+VI ++N  
Sbjct: 241 TGNIAFRARFNNSDNLLRNGETGKIQMVVPLKNALVIPQKATYDIQDKTYVFVIDKNNKV 300

Query: 297 KRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVS 338
             R +++   + +  ++  G+  G+KI+++G+  ++D+ +++
Sbjct: 301 HSRAITIAGDLPDLYIVGDGITTGDKILLEGVQKVKDDDKIA 342