Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  363 bits (931), Expect = e-105
 Identities = 183/310 (59%), Positives = 242/310 (78%)

Query: 31  AISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKL 90
           A+ + +  V++ +++Q LS+VGKL A +SV IAAEV+GKV  I +  NQ V +GQ+L+ L
Sbjct: 63  AVPIASARVEAHEVAQHLSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQGQVLVHL 122

Query: 91  DDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQAN 150
           +D KA+A L EAKAYL DE+RKL EY+RL+K++AIT TEIDAQ A V+I +ARL AAQA+
Sbjct: 123 EDAKAKANLAEAKAYLNDERRKLGEYKRLIKQHAITQTEIDAQLASVDIAEARLQAAQAD 182

Query: 151 LADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKV 210
           L    + APFDG +G +DFS GK VS GSEL++LD+LS MRLDLQIPERYL Q+  GM V
Sbjct: 183 LDYHTLKAPFDGVIGLVDFSLGKLVSVGSELVSLDDLSSMRLDLQIPERYLSQIYLGMPV 242

Query: 211 QGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISA 270
             SS AWP  QF G VVA+  RIN ETLNL+VRV+F NP  +L+PGML+SAR+ F  ++ 
Sbjct: 243 VASSSAWPGEQFHGQVVAMAPRINSETLNLKVRVNFDNPSLQLRPGMLISARLDFAPVTQ 302

Query: 271 PIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVN 330
            ++PVQALEYSGTKRFVYVI  DN+A+R +V+LGAR+++QV+I+ GL +G++IVV+G+VN
Sbjct: 303 AVVPVQALEYSGTKRFVYVIDSDNIARRTQVTLGARIDDQVLIDDGLSLGDRIVVKGLVN 362

Query: 331 MRDNARVSEV 340
           MRD  +V +V
Sbjct: 363 MRDGIKVEDV 372