Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  131 bits (329), Expect = 4e-35
 Identities = 93/344 (27%), Positives = 164/344 (47%), Gaps = 26/344 (7%)

Query: 22  SAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQV 81
           +AK   Q   + V T   + + +   +  VG ++   +V + + V G+V  +  +  Q V
Sbjct: 67  AAKAKPQKRPVPVATALAEKRDLPVVVRTVGNVEPYATVSVKSRVDGQVVGVHFKEGQDV 126

Query: 82  KKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTE-------YERLLKRNAITPTEI---- 130
           +KG +L  +D    +AAL EA+A LQ ++  L +       +E+L+    ++  +     
Sbjct: 127 RKGDLLFSVDRRALEAALSEAQARLQRDRVLLAKADEDVRRFEKLVADGYVSRDQYEQYR 186

Query: 131 ---DAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSE--LLTLD 185
              D+ RA V   +A +  A+  L+   ITAP  G  G +   +G  V AG++  L+ +D
Sbjct: 187 SSADSLRATVRADEASVETARVQLSYTTITAPMSGRAGQVKVDQGNMVRAGADTVLVVID 246

Query: 186 NLSLMRLDLQIPERYLPQLSKGM---------KVQGSSEAWPNVQFEGSVVAVDSRINQE 236
            +  + +   +PE +L      M         +V GS+     V   G+V  VD+ +N  
Sbjct: 247 QIEPIYVGFALPEMHLATARARMAAGGVPVQARVPGSANGAGGVSARGTVSFVDNTVNTA 306

Query: 237 TLNLRVRVHFPNPDQRLKPGMLMSARIHFPAI-SAPIIPVQALEYSGTKRFVYVIGEDNV 295
           T  +R+R  F N  + L PG  +   +    +  A ++P QA++      F YV+ +DN 
Sbjct: 307 TGTIRMRGTFANEARVLWPGQFVDVYVELGEVPGAVVVPAQAVQTGSQGLFAYVVVQDNT 366

Query: 296 AKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSE 339
            + R+V  G   + QVVIE+G+  GE++V+ G + +   A V E
Sbjct: 367 VQLRKVRTGLAHDGQVVIEEGVAAGERVVIDGHLRLTPGAVVEE 410