Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  385 bits (989), Expect = e-112
 Identities = 203/361 (56%), Positives = 266/361 (73%), Gaps = 13/361 (3%)

Query: 3   KNTVLSLTLL----TLLMNSAVLSAKEPNQPP----AISVVTESVQSQQISQSLSVVGKL 54
           K T++++ L+    T +  S VL A +P   P     + VVT  V    ++QS+S++GKL
Sbjct: 2   KKTIIAIALIATVATAVSFSDVLQAAKPESAPQPMRTVPVVTGEVVEHPLAQSVSLIGKL 61

Query: 55  KAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLT 114
            A+++V IA +V GK+  IAV +NQ VKKGQ+LI+LDD KAQAA+ EA A+L DE RKL 
Sbjct: 62  AADRAVVIAPQVTGKIKQIAVVSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKLK 121

Query: 115 EYERLLKRNAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKW 174
           E+E+L+ RNAIT TEIDAQ+A V+I +ARL +AQA+L    + APF G  G I+FS GK 
Sbjct: 122 EFEKLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGQTGLINFSEGKM 181

Query: 175 VSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRIN 234
           VS G+EL+TLD+LS MRLDLQ+PE +L Q+S GM V  +S AWP   F G VVA+D R+N
Sbjct: 182 VSTGNELMTLDDLSSMRLDLQVPEHFLSQISIGMPVSSTSRAWPGETFIGKVVAIDPRVN 241

Query: 235 QETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGEDN 294
           +ETLNL++RV F N D RLKPGM+MS+ I FP ISAPI+PVQALEYSGTKR+VYV+GED+
Sbjct: 242 EETLNLKIRVQFENTDNRLKPGMMMSSTITFPPISAPIVPVQALEYSGTKRYVYVVGEDH 301

Query: 295 VAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVE-----GRPLKK 349
           +A R EV LGARV +QV+I+ GL+IG+K+VVQG+VNMRD  +++EV +E      RP K 
Sbjct: 302 IAHRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKINEVALEAKNSNNRPAKS 361

Query: 350 D 350
           D
Sbjct: 362 D 362