Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., HlyD family-related protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  182 bits (463), Expect = 9e-51
 Identities = 101/303 (33%), Positives = 168/303 (55%), Gaps = 2/303 (0%)

Query: 29  PPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILI 88
           PP  +VV  +    Q+   +  +G  KA +SV I  +V   V  +       VKKG +L+
Sbjct: 34  PP--NVVIAAAAMAQVRDEVEAIGTNKAYESVTITPKVTDVVTSLKFDDGDIVKKGDLLV 91

Query: 89  KLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQ 148
           +L + +  A +  A+  + D QR+L     L+    +   E D  +  ++  +A L  AQ
Sbjct: 92  QLQNAEQLAKVKVAQVKVSDNQRELARISSLVTSRTVAELERDRLQTLIDTTRAELEQAQ 151

Query: 149 ANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGM 208
           ++L D  I APF+G +G    S G  V+ G+E+ TLD++S ++LD  +PER++ +L  G 
Sbjct: 152 SSLNDRSIVAPFNGRLGLRQVSVGSLVTPGTEISTLDDISKIKLDFSVPERFIQELQPGK 211

Query: 209 KVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAI 268
            V+  + A+P+  F+G V+++DSR+N  T  + VR   PN D RL PGMLM  ++   + 
Sbjct: 212 LVEAKAVAFPDEIFKGKVISIDSRVNPTTRAVIVRAEIPNHDLRLLPGMLMKVKLIKRSR 271

Query: 269 SAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGI 328
            A ++P  A+       FVY + +DNV +R++V++G R    V I  GL IGE +V++G+
Sbjct: 272 EALMLPESAIIPIQKSHFVYSVNKDNVIERKQVTIGIRTRGWVEITDGLAIGENVVIRGL 331

Query: 329 VNM 331
           + +
Sbjct: 332 LKV 334