Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  124 bits (312), Expect = 3e-33
 Identities = 99/355 (27%), Positives = 167/355 (47%), Gaps = 33/355 (9%)

Query: 11  LLTLLMNSAVLSAKEPNQ---PPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVA 67
           +L + M +A+   KE  Q   PPA  V  +++ +  +  +   V +    + V++ A V 
Sbjct: 15  VLVVAMMAALTGCKEEAQKGAPPAPLVEVKTITAGDVPVTSEYVAQTAGSREVEVRARVT 74

Query: 68  GKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLT----EYERLLKR- 122
           G +        + +KKG ++ ++D D  +AAL +A+  L  EQ +L+    E +R+L   
Sbjct: 75  GILLKRTYTEGRPIKKGALMFEIDPDTYKAALDQAEGQLAQEQARLSRARLERDRVLALY 134

Query: 123 --NAITP-------TEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGK 173
             NA++        TE D+  A V++ QAR+  A+ NL    + AP  G       S G 
Sbjct: 135 ADNAVSQKDRDDAVTEFDSASAAVKVAQARVKEARINLGYTRVDAPIAGVTSKEVRSEGS 194

Query: 174 WVSA---GSELLTLDNLSLMRLDLQIPERYLPQLSK------------GMKVQGSSEAWP 218
            VS    GS L T+  L  + ++  +P   +  L +            G+ VQ +     
Sbjct: 195 LVSPSADGSLLTTITRLDPLYVNFGVPGTEMSSLRRLIESGKAEMPADGLAVQLTLPDGT 254

Query: 219 NVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAI-SAPIIPVQA 277
                G +   D +++Q T  +R R  FPNP+  + PG  + A++    + +A I+P +A
Sbjct: 255 VYARTGKITFTDKQVDQTTGTVRSRAEFPNPEAEVMPGQFVRAKVLGLVLKNAIIVPQRA 314

Query: 278 LEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMR 332
           +  +     VYV+G D VA  R V +   +    +IEKGL  GE I+V+GI+  R
Sbjct: 315 VLETQKGPMVYVVGSDMVANLRPVVVAEALGGDYLIEKGLSGGETIIVEGIIKAR 369