Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., putative membrane fusion protein precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  134 bits (338), Expect = 3e-36
 Identities = 89/315 (28%), Positives = 162/315 (51%), Gaps = 15/315 (4%)

Query: 25  EPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKG 84
           + N    ++V  + ++ Q ++   +  G L  ++ VD++ E +GKV  I  +    VKKG
Sbjct: 43  QKNGKKILNVNAKVIKPQLLTDEYTTTGVLLPDEEVDLSFETSGKVIEINFEEGTPVKKG 102

Query: 85  QILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARL 144
           Q+L K++D + QA L    + L+  + ++   + LLKR+A++    +  +  +    A +
Sbjct: 103 QLLAKVNDRQLQAQLQRLVSQLKLAEDRVFRQDALLKRDAVSKEAYEQVKTDLATLNADI 162

Query: 145 NAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQL 204
              +AN+A   + APFDG +G    S G + S  + +  L  ++ ++++  +PERY  Q+
Sbjct: 163 EIVKANIALTELRAPFDGIIGLRQISVGSYASPTTIVAKLTKITPLKVEFSVPERYASQI 222

Query: 205 SKG----MKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMS 260
            KG     +++G  +A     F   V AV+S I+        R  +PN ++ L PG   S
Sbjct: 223 KKGTNLNFRIEGKLDA-----FSAKVYAVESTIDPNLHQFTARALYPNTNRALLPGRYTS 277

Query: 261 ARIHFPAI-SAPIIPVQAL--EYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGL 317
            ++    I +A  IP +A+  E    K F+Y  G+   A+  EV+ G R + +V I +GL
Sbjct: 278 IQLKKEEIPNAIAIPTEAIVPEMGKDKVFLYKSGK---AEPVEVTTGIRTDAEVQIVRGL 334

Query: 318 QIGEKIVVQGIVNMR 332
           Q+G+ I+  G + +R
Sbjct: 335 QVGDTILTSGTLQLR 349