Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  183 bits (464), Expect = 7e-51
 Identities = 99/299 (33%), Positives = 167/299 (55%)

Query: 33  SVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDD 92
           +VV        +   +  +G  KA +SV I  +V   V  +       VKKG +L++L +
Sbjct: 36  NVVIAMAAMAPVRDEVEAIGTNKAFESVTITPKVTDVVTSLKFDDGDIVKKGDLLVQLQN 95

Query: 93  DKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQANLA 152
            +  A +  A+  + D QR+L     L+    +   E D  +  ++  +A L  AQ++L 
Sbjct: 96  AEQIAKVKVAQVKVSDNQRELARISSLVTSRTVAELERDRLQTLIDTTRAELEQAQSSLN 155

Query: 153 DLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQG 212
           D  I APF+G +G    S G  V+ G+E+ TLD++S ++LD  +PER++  L  G +V+ 
Sbjct: 156 DRSIVAPFNGRLGLRQVSVGSLVTPGTEITTLDDISKIKLDFSVPERFIQDLQPGKQVEA 215

Query: 213 SSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPI 272
            + A+P+  F+G V+++DSR+N  T  + VR   PNPD RL PGMLM  ++   +  A +
Sbjct: 216 KAVAFPDEIFKGKVISIDSRVNPTTRAVIVRAEIPNPDLRLLPGMLMKVKLIKRSREALM 275

Query: 273 IPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNM 331
           +P  A+     + FVY + +DNV +R++V++G R    V I  GL+IGE +V++G++ +
Sbjct: 276 LPESAIIPIQKEHFVYSVNKDNVIERKQVTIGIRTRGWVEILGGLEIGENVVIRGLLKV 334