Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  382 bits (982), Expect = e-111
 Identities = 202/362 (55%), Positives = 265/362 (73%), Gaps = 13/362 (3%)

Query: 3   KNTVLSLTLL----TLLMNSAVLSAKEPNQPP----AISVVTESVQSQQISQSLSVVGKL 54
           K T++++ L+    T +  S VL A +P   P     + VVT  V    ++QS+S++GKL
Sbjct: 2   KKTIIAIALIAAVATAVSFSDVLQAAKPESAPHLMRTVPVVTGEVVEHPLAQSISLIGKL 61

Query: 55  KAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLT 114
            A+++V IA +V GK+  IAV +NQ VKKGQ+LI+LDD KAQAA+ EA A+L DE RKL 
Sbjct: 62  AADRAVVIAPQVTGKIKQIAVTSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKLR 121

Query: 115 EYERLLKRNAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKW 174
           E+E+L+ RNAIT TEIDAQ+A V+I +ARL +AQA+L    + APF G  G I+FS GK 
Sbjct: 122 EFEKLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGKTGLINFSEGKM 181

Query: 175 VSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRIN 234
           VS G+EL+TLD+LS MRLDLQ+PE +L QLS GM V  +S AWP   F G VVA+D R+N
Sbjct: 182 VSIGTELMTLDDLSSMRLDLQVPEHFLSQLSIGMPVSATSRAWPGETFIGKVVAIDPRVN 241

Query: 235 QETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGEDN 294
           +ETLNL++RV F N   RLKPGM+MS+ + FP ISAPI+PVQALEYSGTKR+VYV+GED+
Sbjct: 242 EETLNLKIRVQFENAKNRLKPGMMMSSTLTFPPISAPIVPVQALEYSGTKRYVYVVGEDH 301

Query: 295 VAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVE-----GRPLKK 349
           +A R EV LGARV +QV+I+ GL+IG+K+VVQG+VNMRD  +++EV +E      RP  K
Sbjct: 302 IAHRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKINEVVLEAKNDANRPAAK 361

Query: 350 DD 351
            D
Sbjct: 362 SD 363