Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  132 bits (332), Expect = 1e-35
 Identities = 83/346 (23%), Positives = 177/346 (51%), Gaps = 11/346 (3%)

Query: 15  LMNSAVLSAKEPNQPPAISVVTE-SVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMI 73
           LM  + ++    N P A   VT  ++  Q+   ++  +G ++  Q V I+ E+AG+V  I
Sbjct: 24  LMVKSKIAEAIANMPEAEFPVTAMTLDMQKWQPTIDAIGFVEPHQGVTISNELAGRVTSI 83

Query: 74  AVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQ 133
             +   +V+KGQ+L +LD    +A L      L   +       +L  + +++  ++D  
Sbjct: 84  NFENGSRVEKGQLLAELDAKVERANLKSKMVQLPAAEADFKRLSKLYAQKSVSKQDLDNS 143

Query: 134 RARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLD 193
            ++    QA + + +A +    I+APF G VG  + + G+++  G++++ L+++S M++ 
Sbjct: 144 ESKYLALQADIESLKATIERREISAPFSGLVGIRNINLGEYLQPGTDIVRLEDISTMKIR 203

Query: 194 LQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRL 253
             IP+  LP+++ G K+    +++P   FEG + A++  +  ++  ++V+   PN + +L
Sbjct: 204 FTIPQTQLPRIAVGQKIHVFVDSYPEQPFEGEIAAIEPAVFYQSGLIQVQARIPNDNAKL 263

Query: 254 KPGMLMSARIHFPAISAP-IIPVQALEYSGTKRFVYVIGE-----DNVAKRREVSLGA-- 305
           + GM     I  P +    ++P  A+ ++     +Y+I E       +A+  +++L    
Sbjct: 264 RSGMFARVSILLPELDNQFVLPQTAINFTLYGNSIYLIKEVEENGKKLARVEQINLTVLE 323

Query: 306 RVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVEGRPLKKDD 351
           R  N  ++   L+ G++IV  G + + +N++V+   VE + L   D
Sbjct: 324 RNGNNALVSGALKAGDRIVTSGQIRLSNNSKVT--VVEDQALTHSD 367