Pairwise Alignments

Query, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., LacI family transcription regulator (RefSeq) from Shewanella amazonensis SB2B

 Score = 93.6 bits (231), Expect = 7e-24
 Identities = 90/329 (27%), Positives = 156/329 (47%), Gaps = 33/329 (10%)

Query: 1   MNRKLTILDIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGG 60
           M  K T +DIA  +GV +STVSR L + P V PET+ K+  +  E  Y   K+A  +R  
Sbjct: 23  MASKATSIDIAYRAGVSQSTVSRALRDSPLVSPETKEKIRAIARELNYKVDKNASNLRTQ 82

Query: 61  SQKVVGIII-------SRLDSPSENKAVSTMLQAFYAHGYDVVIMESQFSREKTNAHLKV 113
           +   + +++         L +P     + ++ +A    GYD+++   Q S   ++ H   
Sbjct: 83  NSHTLALLLCEDPTNDDSLINPFFLSMLGSITRATAKQGYDLLVSFQQLS---SDWHADY 139

Query: 114 LAKRQVDGVIVFG---FTDIDH--DALLSWQ-HRCVLLAMHS-DEISSINYDN--AGVIE 164
               + DG+I+ G   F D +H  + LL+   H  +  A H+   ++S+  DN   G+I 
Sbjct: 140 EDSNKADGIILLGYGDFVDYEHKLERLLAQNTHFVIWGAEHNKSTVASVGCDNQQGGLI- 198

Query: 165 RALQHLAQKQLRDIAFIGVDPRDKTTGEQRLNAYLNWCVEHEIVAN--YQTGQLHHESA- 221
            A +HL     + +AF+G           R   ++    +  +VA+   Q   +  ESA 
Sbjct: 199 -ATEHLLSLGRKSVAFLGDASSHSPEFRDRYLGHVRALKDAGLVADKRCQVDAISTESAG 257

Query: 222 YLLVDKVLTE--QTQAIVCASDTLALGVIKRLQEL---QRDDVVVTGVGGNELLSFLFPN 276
           +   +K++ +  Q  AI  ASD +A+G I+ L+E      +DV V G     + SF  P 
Sbjct: 258 FDAANKLIRKGAQFDAIFAASDLIAIGAIRALKEAGLRVPEDVAVVGYDDIPVASFANPP 317

Query: 277 IFSVDPGYREAGKLAADLLIEQLCGSDHG 305
           + ++    ++  +LA ++L+E L    HG
Sbjct: 318 LTTI----KQNTQLAGEMLVESLLKLIHG 342