Pairwise Alignments

Query, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., LacI family transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 97.1 bits (240), Expect = 6e-25
 Identities = 88/320 (27%), Positives = 152/320 (47%), Gaps = 26/320 (8%)

Query: 2   NRKLTIL-DIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGG 60
           NRK T L D+A+  GV   TVSR L + P++  E  AK +++  E  Y P+  A ++R  
Sbjct: 3   NRKHTSLKDLAQALGVSIPTVSRALKDSPEISRELCAKAKKLAKEMNYRPNPFAMSLRKN 62

Query: 61  SQKVVGIIISRLDSPSENKAVSTMLQAFYAHGYDVVIMESQFSREKTNAHLKVLAKRQVD 120
           + +++G+I+  + +      ++ +      +GY V+I  S  S E    +++ L   +V+
Sbjct: 63  APRIIGVIVPDIVTHFFASILNGIENMAIDNGYFVIITTSHESFEHEKRNIENLVNMRVE 122

Query: 121 GVIVF---GFTDIDHDALLSWQHRCVLL---AMHSDEISSINYDNAGVIERALQHLAQKQ 174
           G+I       TD  H A L   +  ++L      +D+ SS+  D A   + A QHL    
Sbjct: 123 GIIACLSQETTDFSHFAALKEINMPLILFDRVCLTDQFSSVIADGAQSAQMATQHLLDNG 182

Query: 175 LRDIAFIGVDPRDKTTGEQRLNAYLNWC------VEHEIVA----NYQTGQLHHESAYLL 224
            + +AFIG         ++R + YL         +E E+V     +Y+ GQ+  E+    
Sbjct: 183 SKRVAFIG-GANHLDIVKRRKHGYLEALRDNRIPIEKELVVCRKIDYEEGQIATETLL-- 239

Query: 225 VDKVLTEQTQAIVCASDTL---ALGVIKRLQELQRDDVVVTGVGGNELLSFLFPNIFSVD 281
               L +   AI+  +DTL   A+ VIKR      DD+ + G    +  +++ P + +V 
Sbjct: 240 ---SLPQPPDAILAMNDTLAFAAMEVIKRHGLRIPDDIAIIGYTDEQHANYVEPKLSAVS 296

Query: 282 PGYREAGKLAADLLIEQLCG 301
               + G+ A  LLI+Q+ G
Sbjct: 297 HQTYKMGETACQLLIDQIKG 316