Pairwise Alignments

Query, 198 a.a., SecY-interacting protein from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., SecY interacting protein Syd (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (270), Expect = 7e-29
 Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 13/188 (6%)

Query: 20  SVVQALSAFSQRFLQHCAQQTGQLPENDELLGLASPCVVE---ELTDV-----VRWRPVN 71
           S + AL  F   + Q  + + G+ P    L G ASPCV+E   E  D      V+W+ V 
Sbjct: 2   SSLPALDQFFTLYHQAYSDKLGESPRYFPL-GEASPCVLECDQEKVDASPERSVQWQAVK 60

Query: 72  REVWADFSNVERAIELTLHEDIKAFYASQFSADMPAQWRGRELTLLQVWSEDDFTRLQEN 131
           R+    F N+E A+ +TLH  I+AFY   F+A +  +    E  LLQ W++ DF  LQ+N
Sbjct: 61  RDSQGPFDNIEHALSITLHPSIQAFYGRYFAAPLMFESEFGEGELLQPWNQQDFEYLQQN 120

Query: 132 ILGHLVMQRRLKQKPTVFIAT--TEDEMAVVSVCNLSGNVILEKLGTAQREVLTADLETF 189
           ++GHL+M+++LKQ  T FI      DEM VV   N +G+V +E  G      L A LE F
Sbjct: 121 LIGHLMMKQKLKQPATWFIGVLGEGDEMLVVE--NETGSVWIEIPGEQPHRQLAASLEDF 178

Query: 190 LEQLEPKV 197
           +  L P+V
Sbjct: 179 IASLRPRV 186