Pairwise Alignments

Query, 753 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 74.3 bits (181), Expect = 2e-17
 Identities = 144/697 (20%), Positives = 272/697 (39%), Gaps = 70/697 (10%)

Query: 69  RDEADSRTRTPGSTVDAL--MILALALDNLGEHEQAQQILRDANALTEQY----QLPYLH 122
           R++ +   +  G + D    ++  LA  NL  + + +   +DAN+L E      Q P   
Sbjct: 55  REQFERAAQEQGYSPDEFEHILQLLARLNLEPNVKTKVEFQDANSLIELLTSIAQTPLEQ 114

Query: 123 LDVQILSTRLIWQKEGDAQAARERIQKINEQYQVIENADQIAKGIDYKLTLLSAEIASKA 182
             V +L  R I + E   Q  +E I   N+    I ++      +D    LL   I    
Sbjct: 115 ATVAMLKGRYIGRTE---QKYQEAIAFYNQALSHINDS------VDLGSMLLKHTIHEHL 165

Query: 183 NELELADKLFAKAKPYLDTLQN--EKPAIEYHLTLGEHNLSHG-RYNLALSELLIAYWSA 239
             L L  +    A  +  T ++   K   +Y +   E  L H    N  L++ L  Y  A
Sbjct: 166 GLLHLVIRQDVPALMHFHTYRDIAYKLRNDYLIAAAESKLGHYYNKNQQLTKSLQHYSEA 225

Query: 240 IE----NNAGVLLAQANTLLGKLFFNRQVLDKALDHFSQAADFYGRYEQSPFLSAVLKQM 295
           +     +N   +       L K++ + +  D+AL +  +AA  + +     +LS+ +  +
Sbjct: 226 VRLSNRSNYPSMKTHLQLQLAKVYRDLKQWDEALKNAHEAAAGFKKLGNDTYLSSCMTVI 285

Query: 296 GDVYYQQGKYNLALVHYFNVIDHQNNQSSLSDEIEIRINLSATYLQLYNYPVAEQYLTSA 355
             VY +QG +N A+ +Y N       + +   +     NL   Y  L +   A +YL  A
Sbjct: 286 AMVYGEQGDWNRAIDYYLNAQQLDAKRGNYIAQGLNFHNLGQAYSHLNDNVNALKYLLMA 345

Query: 356 EELLGMADIPRLNGHAALLHSGLAYYQEINQDIVRYAEMALHIGQSIQDDELQEQAYRLL 415
            ++           +  LL   +A  ++    ++ +AE AL +  ++   + Q+ A   +
Sbjct: 346 NKIFTDKQSHHYLVYNELLIGEIAQSKQDWTLMMSHAEHALALASNLALLDEQKSALTQI 405

Query: 416 SLGYERTGSAAKALDNFKKSQVLAQKRQNKLNQISEDAFRQQREFIEQTLHLV-GQEKQL 474
           +L  E+    AK +   K+   L    +N     +  A     + ++  L++V G+    
Sbjct: 406 ALSAEKMQDQAKVISTQKRIIELNNTSKNTAKDPAVAASVLAEQQLKLELNMVQGKLNDA 465

Query: 475 QETNNQFSQLRKVALFLLSISLVLFLITLRRGYLIQGFQDQISELH-DTLFTHSRSRLSN 533
            E+  + ++L  ++  +L++ ++  +  L +    +   + + +L  +  FTH +   + 
Sbjct: 466 IESAKETNKLLALSGVILTLLVIAIIALLNQRQKSRRQNESLLQLTLEEPFTHHKGYAAL 525

Query: 534 LRMLNAKLPSSLENSNRNYEQWQLGELIRQPLNDRLRFVLIDIPFMRNMYLQNGYTAGLE 593
           LR L    P +   +           L      D L   L         Y  N  T  L 
Sbjct: 526 LRDLGPNTPHTRTTA-----------LALIEFRDHLMTDL-----NHGQYFANAITCQLA 569

Query: 594 LERAFGKFLKTKIKEPDRLYHFSDASLLYIEKNG------SERSEPEILFNQIQSWLNDF 647
              +   F+                  +Y+ + G      +E  +P+    Q+Q  L+  
Sbjct: 570 SHISNSLFMP-----------------VYVIRQGLFAVRFTETVDPQQALTQLQQQLD-- 610

Query: 648 APERKINRIVRIGIADYPFLPRAYTAINDKELLDILLMATNIARELSLSEGQSHWVYFKA 707
             +     I  +G  + P L +    I  K L + + MA   AR  SL     H+V  +A
Sbjct: 611 --KNAFTAIFNLGFINLPLLTKTEINIAPKLLFETVQMALAGAR--SLPSNTCHYVSLRA 666

Query: 708 IDNAPAASFASENIRLSCKQAINQGLIKVHSSYKNED 744
           +D  P   FA + + L  ++ I +GLI+V ++   ED
Sbjct: 667 LDFVPPTLFA-DPLFLHLEKGIERGLIRVETNAMKED 702