Pairwise Alignments

Query, 524 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (253), Expect = 3e-26
 Identities = 77/282 (27%), Positives = 140/282 (49%), Gaps = 21/282 (7%)

Query: 248 FLEQVNLSIGNNLKSATQNLEQSQSYMAHRQ-EMNGELSSLVARSQTALKEQTELEQ--- 303
           F ++VN S+  N        E+S   + + Q E    ++SL+++  T L + TE      
Sbjct: 41  FTKEVNTSLYKNFIQ-----EKSPEVIENVQIETQILINSLISKI-TQLNQGTEAFSNTL 94

Query: 304 ----LKLKMAPLLREMSSLSERLLLAEQREQALLERMRYSKDQMEALSDLAQDYRRRLED 359
               L+L+ +P +  ++ L + ++      Q LL   +  +  + A+    Q+ +  +E+
Sbjct: 95  ADFGLQLQSSPDVNTLNQLVDGVI---DEMQNLLVNNQTMEQSLNAMGQEVQNLKTEMEN 151

Query: 360 QALRAQLDPLTKVYNRSSFTERLEHEYRRWIRTQHNLRVVLFDIDKFKSINDSFGYTAGD 419
            +L A  D LT ++NR ++   ++    R         ++L DID+FK  ND++G+  GD
Sbjct: 152 LSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRFKVFNDTYGHQVGD 211

Query: 420 KALSIIARTIKKELRDSDTVARFSGEEFILLLPERSDNESYQIIHQIQLNVSKLPFKF-R 478
           K L+ +A  +K+ +R  D VAR+ GEEF++LLP    +++ Q+   ++  +S+      +
Sbjct: 212 KVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETLRGRISERRLAIGK 271

Query: 479 DKSLT---ITLSAASIRFMDSDTPETVLDRLNLTLSEAKHIG 517
           DK L+   IT+S         D  ET+  R +  L EAK  G
Sbjct: 272 DKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDG 313