Pairwise Alignments

Query, 524 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (581), Expect = 4e-64
 Identities = 149/514 (28%), Positives = 271/514 (52%), Gaps = 13/514 (2%)

Query: 14  ELQKLKSQLEQVRLTQRDTSFKFNREQQVLKRMVTSLATTCRGSSSRLNQSLEELCFALE 73
           +L  L+ +L   +L   + +   N + Q L + +  L+  C+G +  L+  L +L   L 
Sbjct: 10  QLALLQQKLHSAKLALDEVNEDRNAKLQTLLQFIGHLSLACKGQNLELDNKLAKLRHNLN 69

Query: 74  QQKDISTLIPKLAVLERMLKQQSLAMDKQTSHLDSQLQHSGETLLRVPGLPAKIKRDLRD 133
               +   +P+L  +ER+LK Q   +  Q     + L      + RV  +P K+K+++ +
Sbjct: 70  TFDRVDEALPELVDVERLLKGQYHHVMVQLEESRAGLAQVIRQIQRVNSVPEKLKKEI-N 128

Query: 134 LLSFSAAQPL----EKTQQALRLLEIYERAVKIQCANPNLALNELTQQADRELLHRLAVD 189
                 A+P     E   +  +++  Y+  ++ Q  N    L+ L +   R+L H LA  
Sbjct: 129 YFKQDLAKPFHTVWEYIPKVKQIIGFYDTILQQQF-NGTEKLDVLPKH--RQLAHELA-- 183

Query: 190 LQHLITELDFNGESGDQLTDIRTKLLLGVNTHTLLELTLEVLRLVVDGSHAERKAAEAFL 249
              +I+E++F  +  DQ+  I+  L   +    LLE    +L L++D    E+ A++ FL
Sbjct: 184 --QMISEIEFRKDQRDQVLVIKEMLASDIEIDNLLEAYQTILSLLLDNIAREKSASQEFL 241

Query: 250 EQVNLSIGNNLKSATQNLEQSQSYMAHRQEMNGELSSLVARSQTALKEQTELEQLKLKMA 309
             +N ++    +  +++   +Q     + ++N E++S V     A+ +  ++  LK ++ 
Sbjct: 242 YALNDALAAVREVVSESYNHNQRSFQLKTQLNREINSRVDNVGEAIIDTDDIVDLKARLT 301

Query: 310 PLLREMSSLSERLLLAEQREQALLER-MRYSKDQMEALSDLAQDYRRRLEDQALRAQLDP 368
             L  + S   R    EQREQALL + M   + ++  LS+ A  Y+ RL +Q     LD 
Sbjct: 302 EQLNSIRSALARKETLEQREQALLRKSMETMRKELNELSNEANTYKERLFEQQKLNLLDS 361

Query: 369 LTKVYNRSSFTERLEHEYRRWIRTQHNLRVVLFDIDKFKSINDSFGYTAGDKALSIIART 428
           LT++ NR++  ER+E EYR + R +  L + + DID FK INDSFG++ GDK L +IA  
Sbjct: 362 LTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDSFGHSTGDKTLQVIAMA 421

Query: 429 IKKELRDSDTVARFSGEEFILLLPERSDNESYQIIHQIQLNVSKLPFKFRDKSLTITLSA 488
           +K  LRD++ VAR+ GEEF+L+LP+  D++  Q++++++  V  +PFKF+++ +T+T+S 
Sbjct: 422 LKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKNIPFKFKNQRITVTVSI 481

Query: 489 ASIRFMDSDTPETVLDRLNLTLSEAKHIGPSQLV 522
            + R M ++      +R +  L +AKH    ++V
Sbjct: 482 GAARVMGNELIHETFERADAALYKAKHESRDRVV 515