Pairwise Alignments

Query, 524 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 21/187 (11%)

Query: 353 YRRRLED-----QALRAQL-------------DPLTKVYNRSSFTERLEHEYRRWIRTQH 394
           Y RRL D     +ALR +L             DPLTK+YNR  F  +  HE+R  I ++ 
Sbjct: 299 YNRRLTDKNEQLEALRLRLEHTNAELEFLSTHDPLTKLYNRHYFNRQFVHEHRSEISSEG 358

Query: 395 NLRVVLFDIDKFKSINDSFGYTAGDKALSIIARTIKKELRDSDTVARFSGEEFILLLPER 454
            + +V+ DID FK IND+ G+  GD  L  ++  ++  +R++D VAR+ GEEF++L  + 
Sbjct: 359 AICLVMLDIDFFKEINDTLGHAVGDNILMELSGVLQHCVRETDVVARWGGEEFVILCHQT 418

Query: 455 SDNESYQIIHQIQLNVSKLPFKFRDKSLTITLSAASIRFMDSDTPETVLDRLNLTLSEAK 514
           S +    +  +I   +    F     ++ +T S    + ++++  ++  +R +  L +AK
Sbjct: 419 SIDLVKTLCQRIAAAIKDYRF---SGNVQLTCSFGIAKLVNNEPMQSCFERADKALYQAK 475

Query: 515 HIGPSQL 521
            +G +Q+
Sbjct: 476 ALGRNQI 482